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Series GSE54325 Query DataSets for GSE54325
Status Public on Jul 30, 2014
Title Impact of monomeric and oligomeric flavanols (MOF) consumption on the gene expression profile of leukocytes (human)
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Background: In a recent intervention study, the daily supplementation with 200mg monomeric and oligomeric flavanols (MOF) from grape seeds for 8 weeks revealed a vascular health benefit in male smokers. The objective of the present study was to determine the impact of MOF consumption on the gene expression profile of leukocytes and to assess changes in DNA methylation. Methodology/Principal Findings: Gene expression profiles were determined using whole genome microarrays (Agilent) and DNA methylation was assessed using HumanMethylation450 BeadChips (Illumina). MOF significantly modulated the expression of 869 genes. The majority of the affected genes are involved in chemotaxis, cell adhesion, cell infiltration or cytoskeleton organisation, suggesting lower immune cell adhesion to endothelial cells. This was corroborated by in vitro experiments showing that MOF exposure of monocytes attenuates their adhesion to TNFα-stimulated endothelial cells. Nuclear factor-kappa B reporter gene assays confirmed that MOF decrease the activity of NF-κB. Strong inter-individual variability in the leukocytes DNA methylation was observed. As a consequence, on group level, changes due to MOF supplementation could not be found. However, in individuals, significant changes in DNA methylation of genes involved in leukocyte rolling, adhesion and cytoskeleton remodelling were seen. At the group level, the variation in DNA methylation related to life style and clinical parameters appeared to overrule the magnitude of effects of supplementation with MOF. Conclusion: Our study revealed that regular consumption of MOF modulates the expression of genes in immune cells which, however, cannot be correlated to alterations in the DNA methylome. Remarkably, at the individual level, genes related to leukocyte adhesion pathways present complex variation in DNA methylation. As such, the individual transcriptional and epigenetic modulation of genes involved in early manifestation of cardiovascular diseases constitutes important subcellular mechanisms by which MOF promote vascular health in humans.
 
Overall design Two-colors experiment, 7 volunteers : blood samples of 7 men, before and after an intervention of 8 weeks with daily intake of MOF (14 samples).
 
Contributor(s) Milenkovic D, Vanden Berghe W, Boby C, Leroux C, Bast A, Weseler AR
Citation(s) 24763279
Submission date Jan 23, 2014
Last update date Jun 30, 2017
Contact name Celine BOBY
Organization name INRA
Street address Centre INRA Auvergne-Rhône-Alpes
City Saint Genes Champanelle
ZIP/Postal code 63122
Country France
 
Platforms (1)
GPL10332 Agilent-026652 Whole Human Genome Microarray 4x44K v2 (Feature Number version)
Samples (7)
GSM1312963 Blood-Volunteer1
GSM1312964 Blood-Volunteer2
GSM1312965 Blood-Volunteer3
This SubSeries is part of SuperSeries:
GSE54690 Transcriptome-Methylome study of blood samples from flavanol diet intervention Paper title: Dietary flavanols modulate the transcription of genes associated with cardiovascular pathology and induces complex changes of their DNA methylation state.
Relations
BioProject PRJNA236183

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE54325_RAW.tar 36.5 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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