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| Status |
Public on Aug 02, 2006 |
| Title |
Expression data from early Drosophila embryo |
| Organism |
Drosophila melanogaster |
| Experiment type |
Expression profiling by array
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| Summary |
Translational control is critical for early Drosophila embryogenesis and is exerted mainly at the gene-specific level.
To understand the post-transcriptional regulation during Drosophila early embryonic development, we used the sucrose polysomal gradient analyses and GeneChip analysis to illustrate the translation profile of individual mRNAs.
A paper was published in Genome Biology 2007 under the tile "Global analyses of mRNA translational control during early Drosophila embryogenesis".
Keywords: time course, fractionation
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| Overall design |
In this study, we have fractionated embryo extracts from a series of early stages by sedimentation on sucrose density gradients and analyzed the RNA components of these fractions. Our analysis has focused on analyzing ribosomal density, generally and for individual transcripts, global translational activity during the first 10 hours after egg laying and coordination between transcription and translation regulation.
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| Contributor(s) |
Qin X, Ahn S |
| Citation(s) |
17448252 |
| Submission date |
Aug 01, 2006 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Soyeon Ahn |
| E-mail(s) |
ahn@stat.berkeley.edu
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| Organization name |
UC Berkeley
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| Street address |
367 Evans Hall #3860
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| City |
Berkeley |
| State/province |
CA |
| ZIP/Postal code |
94720 |
| Country |
USA |
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| Platforms (1) |
| GPL1322 |
[Drosophila_2] Affymetrix Drosophila Genome 2.0 Array |
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| Samples (66)
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| GSM124468 |
embryo at 0-2hour, fraction 1-5, biological rep1 |
| GSM124469 |
embryo at 0-2hour, fraction 6, biological rep1 |
| GSM124470 |
embryo at 0-2hour, fraction 7, biological rep1 |
| GSM124471 |
embryo at 0-2hour, fraction 8, biological rep1 |
| GSM124472 |
embryo at 0-2hour, fraction 9, biological rep1 |
| GSM124473 |
embryo at 0-2hour, fraction 10, biological rep1 |
| GSM124474 |
embryo at 0-2hour, fraction 11, biological rep1 |
| GSM124475 |
embryo at 0-2hour, fraction 12, biological rep1 |
| GSM124476 |
embryo at 0-2hour, fraction 1-5, biological rep2 |
| GSM124477 |
embryo at 0-2hour, fraction 6, biological rep2 |
| GSM124478 |
embryo at 0-2hour, fraction 7, biological rep2 |
| GSM124479 |
embryo at 0-2hour, fraction 8, biological rep2 |
| GSM124480 |
embryo at 0-2hour, fraction 9, biological rep2 |
| GSM124481 |
embryo at 0-2hour, fraction 10, biological rep2 |
| GSM124482 |
embryo at 0-2hour, fraction 11, biological rep2 |
| GSM124483 |
embryo at 0-2hour, fraction 12, biological rep2 |
| GSM124484 |
embryo at 4-6hour, fraction 1-5, biological rep1 |
| GSM124485 |
embryo at 4-6hour, fraction 6, biological rep1 |
| GSM124486 |
embryo at 4-6hour, fraction 7, biological rep1 |
| GSM124487 |
embryo at 4-6hour, fraction 8, biological rep1 |
| GSM124488 |
embryo at 4-6hour, fraction 9, biological rep1 |
| GSM124489 |
embryo at 4-6hour, fraction 10, biological rep1 |
| GSM124490 |
embryo at 4-6hour, fraction 11, biological rep1 |
| GSM124491 |
embryo at 4-6hour, fraction 12, biological rep1 |
| GSM124492 |
embryo at 4-6hour, fraction 1-5, biological rep2 |
| GSM124493 |
embryo at 4-6hour, fraction 6, biological rep2 |
| GSM124494 |
embryo at 4-6hour, fraction 7, biological rep2 |
| GSM124495 |
embryo at 4-6hour, fraction 8, biological rep2 |
| GSM124496 |
embryo at 4-6hour, fraction 9, biological rep2 |
| GSM124497 |
embryo at 4-6hour, fraction 10, biological rep2 |
| GSM124498 |
embryo at 4-6hour, fraction 11, biological rep2 |
| GSM124499 |
embryo at 4-6hour, fraction 12, biological rep2 |
| GSM124500 |
embryo at 8-10hour, fraction 1-5, biological rep1 |
| GSM124501 |
embryo at 8-10hour, fraction 6, biological rep1 |
| GSM124502 |
embryo at 8-10hour, fraction 7, biological rep1 |
| GSM124503 |
embryo at 8-10hour, fraction 8, biological rep1 |
| GSM124504 |
embryo at 8-10hour, fraction 9, biological rep1 |
| GSM124505 |
embryo at 8-10hour, fraction 10, biological rep1 |
| GSM124506 |
embryo at 8-10hour, fraction 11, biological rep1 |
| GSM124507 |
embryo at 8-10hour, fraction 12, biological rep1 |
| GSM124508 |
embryo at 8-10hour, fraction 1-5, biological rep2 |
| GSM124509 |
embryo at 8-10hour, fraction 6, biological rep2 |
| GSM124510 |
embryo at 8-10hour, fraction 7, biological rep2 |
| GSM124511 |
embryo at 8-10hour, fraction 8, biological rep2 |
| GSM124512 |
embryo at 8-10hour, fraction 9, biological rep2 |
| GSM124513 |
embryo at 8-10hour, fraction 10, biological rep2 |
| GSM124514 |
embryo at 8-10hour, fraction 11, biological rep2 |
| GSM124515 |
embryo at 8-10hour, fraction 12, biological rep2 |
| GSM124516 |
embryo at 0-2hour, fraction 1-5,EDTA treated biological rep1 |
| GSM124517 |
embryo at 0-2hour, fraction 6-7,EDTA treated biological rep1 |
| GSM124518 |
embryo at 0-2hour, fraction 8-9,EDTA treated biological rep1 |
| GSM124519 |
embryo at 0-2hour, fraction 10-12,EDTA treated biological rep1 |
| GSM124520 |
embryo at 4-6hour, fraction 1-5,EDTA treated biological rep1 |
| GSM124521 |
embryo at 4-6hour, fraction 6-7,EDTA treated biological rep1 |
| GSM124522 |
embryo at 4-6hour, fraction 8-9,EDTA treated biological rep1 |
| GSM124523 |
embryo at 4-6hour, fraction 10-12,EDTA treated biological rep1 |
| GSM124524 |
embryo at 8-10hour, fraction 1-5,EDTA treated biological rep1 |
| GSM124525 |
embryo at 8-10hour, fraction 6-7,EDTA treated biological rep1 |
| GSM124526 |
embryo at 8-10hour, fraction 8-9,EDTA treated biological rep1 |
| GSM124527 |
embryo at 8-10hour, fraction 10-12,EDTA treated biological rep1 |
| GSM124528 |
embryo at 0-2hour, unfractionated, biological rep1 |
| GSM124529 |
embryo at 4-6hour, unfractionated, biological rep1 |
| GSM124530 |
embryo at 8-10hour, unfractionated, biological rep1 |
| GSM124531 |
embryo at 0-2hour, unfractionated, biological rep2 |
| GSM124532 |
embryo at 4-6hour, unfractionated, biological rep2 |
| GSM124533 |
embryo at 8-10hour, unfractionated, biological rep2 |
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| Relations |
| BioProject |
PRJNA96091 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE5430_RAW.tar |
212.3 Mb |
(http)(custom) |
TAR (of CEL) |
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