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Series GSE52412 Query DataSets for GSE52412
Status Public on Nov 16, 2013
Title TE-Array-- A high throughput tool to study transposon transcription
Organisms Homo sapiens; Mus musculus
Experiment type Expression profiling by array
Other
Summary TE-Array is a custom Agilent microarray that probes for transposable elements in both sense and antisense orientations in humans and mice. TE-Array was used to study expression levels of transposable elements (TE) in a panel of normal mouse tissues.
 
Overall design TE-Array comprises of 4 different custom Agilent 4X44K designs. These 4 different designs have probes for human sense orientation, human antisense orientation, mouse sense orientation and mouse antisense orientation transposable elements. These array designs were used to study the transposon abundance profile in 7 different mouse tissue samples, 2 mouse cell lines and 1 transposon transfected versus untransfected human cell line.
 
Contributor(s) Gnanakkan VP, Jaffe AE, Dai L, Fu J, Wheelan SJ, Levitsky HI, Irizarry R, Boeke JD, Burns KH
Citation(s) 24325565
Submission date Nov 15, 2013
Last update date Feb 17, 2014
Contact name Kathleen Helen Burns
E-mail(s) kburns@jhmi.edu
Phone 410-502-7214
Organization name Johns Hopkins University School of Medicine
Department Pathology
Street address 720 Rutland Ave Ross 524
City Baltimore
State/province MD
ZIP/Postal code 21205
Country USA
 
Platforms (4)
GPL17920 Agilent-025411 Hs_bwtie_imno_ss
GPL17922 Agilent-025450 Mm_bwtie_as
GPL17923 Agilent-025451 Mm_bwtie_ss
Samples (46)
GSM1263269 Female brain compared to pooled tissue reference on sense oriented array
GSM1263270 Male brain compared to pooled tissue reference on sense oriented array replicate 1
GSM1263271 Male brain compared to pooled tissue reference on sense oriented array replicate 2
Relations
BioProject PRJNA228116

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE52412_RAW.tar 405.1 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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