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Series GSE51289 Query DataSets for GSE51289
Status Public on Oct 01, 2013
Title Transcriptomes of Rice internode before and after heading
Organism Oryza sativa
Experiment type Expression profiling by array
Summary To identify genes that co-express with rice cellulose synthase genes involved in rice secondary cell wall formation, transcriptome analyses was performed using rice internodesbefore and after the heading stage, where secondary cell wall formation extensively occur.
 
Overall design Transcriptomes of rice third or the fourth internodes were analyzed at 17, 8, and 1 day before, and 6, 13, and 35 days after heading
Please note that the current data were normalized together with additional 143 sample data available in GEO and the list of the sample accessions is provided in Series supplementary file [normalized_together_GSMs.txt].
 
Contributor(s) Matsuoka M, Hirano K, Aya K, Morinaka Y, Nagamatsu S, Nagamura Y, Sato Y, Antonio BA, Namiki N
Citation(s) 24089433
Submission date Sep 30, 2013
Last update date Dec 03, 2013
Contact name Ko Hirano
Organization name Nagoya University
Street address Furo-cho Chikusa-ku
City Nagoya
State/province Aichi
ZIP/Postal code 4640814
Country Japan
 
Platforms (1)
GPL6864 Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version)
Samples (59)
GSM1242206 entire_3rd_internode_17_days_before_heading_rep1
GSM1242207 entire_3rd_internode_17_days_before_heading_rep2
GSM1242208 entire_3rd_internode_17_days_before_heading_rep3
Relations
BioProject PRJNA222318

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE51289_RAW.tar 453.6 Mb (http)(custom) TAR (of TXT)
GSE51289_normalized_together_GSMs.txt.gz 932 b (ftp)(http) TXT
Processed data included within Sample table
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