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GEO accession:
Series GSE42847
Query DataSets for GSE42847
Status
Public on Apr 01, 2013
Title
Marker gene discovery for Staphylococcus epidermidis infection in zebrafish embryos
Organism
Danio rerio
Experiment type
Expression profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
23586901
Submission date
Dec 11, 2012
Last update date
May 15, 2019
Contact name
Wouter Veneman
E-mail(s)
w.j.veneman@biology.leidenuniv.nl
Organization name
Leiden University
Department
Institute Biology Leiden
Lab
Molecular Cell Biology
Street address
Einsteinweg 55
City
Leiden
State/province
Zuid-Holland
ZIP/Postal code
2333CC
Country
Netherlands
Platforms (2)
GPL14875
Illumina HiSeq 2000 (Danio rerio)
GPL15180
Agilent-028233 Danio rerio Leiden custom 180k array
Samples (36)
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GSM914051
S. epi mcherry O-47 6HPI
GSM914052
S. epi mcherry O-47 30HPI
GSM914053
S. epi mcherry O-47 54HPI
GSM914054
S. epi mcherry O-47 78HPI
GSM914055
S. epi mcherry O-47 102HPI rep1
GSM914056
S. epi mcherry O-47 126HPI
GSM914057
PVP injection 6HPI
GSM914058
PVP injection 30HPI
GSM914059
PVP injection 54HPI
GSM914060
PVP injection 78HPI
GSM914061
PVP injection 102HPI rep1
GSM914062
PVP injection 126HPI
GSM914063
Needle insertion 6HPI
GSM914064
Needle insertion 30HPI
GSM914065
Needle insertion 54HPI
GSM914066
Needle insertion 78HPI
GSM914067
Needle insertion 102HPI rep1
GSM914068
Needle insertion 126HPI
GSM914069
Non-injected 6HPI
GSM914070
Non-injected 30HPI
GSM914071
Non-injected 54HPI
GSM914072
Non-injected 78HPI
GSM914073
Non-injected 102HPI rep1
GSM914074
Non-injected 126HPI
GSM914075
S. epi mcherry O-47 102HPI rep2
GSM914076
PVP injection 102HPI rep2
GSM914077
Needle insertion 102HPI rep2
GSM914078
Non-injected 102HPI rep2
GSM1051294
Non-injected 5 DPI, biol. repl. 1
GSM1051295
S. epi mcherry O-47 5 DPI, biol. repl. 1
GSM1051296
Non-injected 5 DPI, biol. repl. 2
GSM1051297
S. epi mcherry O-47 5 DPI, biol. repl. 2
GSM1051298
Non-injected 5 DPI, biol. repl. 3
GSM1051299
S. epi mcherry O-47 5 DPI, biol. repl. 3
GSM1051300
Non-injected 5 DPI, biol. repl. 4
GSM1051301
S. epi mcherry O-47 5 DPI, biol. repl. 4
This SuperSeries is composed of the following SubSeries:
GSE37227
Marker gene discovery for Staphylococcus epidermidis infection in zebrafish embryos (Agilent)
GSE42846
Marker gene discovery for Staphylococcus epidermidis infection in zebrafish embryos (RNA-Seq)
Relations
BioProject
PRJNA183632
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE42847_RAW.tar
1.4 Gb
(http)
(custom)
TAR (of TSV, TXT)
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