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| Status |
Public on Jul 25, 2012 |
| Title |
Chitin oligosaccharide-responsive genes in suspension-cultured rice cells |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
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| Summary |
Chitin is a major component of fungal cell walls and serves as a molecular pattern for the recognition of potential pathogens in the innate immune systems of both plants and animals. In plants, chitin oligosaccharides have been known to induce various defense responses in a wide range of plant cells including both monocots and dicots. We identified chitine oligosaccharide-responsive genes in suspension-cultured rice cells 1-12 h after treatment using rice 44k microarray.
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| Overall design |
Expression profiling in rice cells treated with chitin oligosaccharide for 1, 2, 4, 6, 8 and 12 h was compared with that in untreated control using two-color method with two biological replicates.
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| Contributor(s) |
Miyamoto K, Chujo T, Shibuya N, Yamane H, Nojiri H, Okada K |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jul 25, 2012 |
| Last update date |
Dec 06, 2012 |
| Contact name |
Kazunori Okada |
| E-mail(s) |
ukokada@mail.ecc.u-tokyo.ac.jp
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| Phone |
+81-3-5841-3070
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| Organization name |
The University of Tokyo
|
| Department |
Biotechnology Research Center
|
| Lab |
Laboratory of Environmental Biochemistry
|
| Street address |
1-1-1, Yayoi, Bunkyo-ku
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| City |
Tokyo |
| ZIP/Postal code |
113-8657 |
| Country |
Japan |
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| Platforms (1) |
| GPL6864 |
Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version) |
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| Samples (12)
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| GSM973452 |
1 h after chitin oligosaccharide treatment replicate 1 |
| GSM973453 |
2 h after chitin oligosaccharide treatment replicate 1 |
| GSM973454 |
4 h after chitin oligosaccharide treatment replicate 1 |
| GSM973455 |
6 h after chitin oligosaccharide treatment replicate 1 |
| GSM973456 |
8 h after chitin oligosaccharide treatment replicate 1 |
| GSM973457 |
12 h after chitin oligosaccharide treatment replicate 1 |
| GSM973458 |
1 h after chitin oligosaccharide treatment replicate 2 |
| GSM973459 |
2 h after chitin oligosaccharide treatment replicate 2 |
| GSM973460 |
4 h after chitin oligosaccharide treatment replicate 2 |
| GSM973461 |
6 h after chitin oligosaccharide treatment replicate 2 |
| GSM973462 |
8 h after chitin oligosaccharide treatment replicate 2 |
| GSM973463 |
12 h after chitin oligosaccharide treatment replicate 2 |
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| Relations |
| BioProject |
PRJNA171307 |
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