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| Status |
Public on Dec 03, 2012 |
| Title |
Rice global gene expression profile in response to plant hormones |
| Platform organism |
Oryza sativa |
| Sample organism |
Oryza sativa Japonica Group |
| Experiment type |
Expression profiling by array
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| Summary |
A time course gene expression profiling of rice treated with various plant hormones (abscisic acid, gibberelin, auxin, brassinosteroid, cytokinin and jasmonic acid) was performed to obtain an overall signature of the rice transcriptome in response to each phytohormone.
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| Overall design |
The transcriptome of rice seedlings treated with various plant hormones such as abscisic acid (ABA), gibberellic acid 3 (GA3), indole-3-acetic acid (IAA), brassinolide (BL), trans-zeatin (tZ), and jasmonic acid (JA) was characterized by microarray analysis. Seven-day old seedlings were transferred in culture solutions with specific hormones and in culture solution without hormone to serve as control (mock treatment). Root samples were collected and analyzed in three replicates at pretreatment (control) and after 15 min, 30 min, 1 h, 3 h and 6 h incubation in culture solutions with each hormone. Shoot samples were collected and analyzed in two replicates at pretreatment (control) and after 1 h, 3 h, 6 h and 12 h incubation culture solutions with each hormone. A total of 93 microarray data for root and 50 microarray data for shoot were obtained.
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| Contributor(s) |
Sato Y, Takehisa H, Antonio B, Namiki N, Nagamura Y |
| Citation(s) |
23180765, 23180784 |
| Submission date |
Jul 17, 2012 |
| Last update date |
Dec 06, 2012 |
| Contact name |
Yutaka Sato |
| E-mail(s) |
satoyu@affrc.go.jp
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| Organization name |
National Institute of Agrobiological Sciences
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| Street address |
2-1-2 Kannondai
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| City |
Tsukuba |
| State/province |
Ibaraki |
| ZIP/Postal code |
305-8602 |
| Country |
Japan |
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| Platforms (1) |
| GPL6864 |
Agilent-015241 Rice Gene Expression 4x44K Microarray (Feature Number version) |
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| Samples (143)
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| Relations |
| BioProject |
PRJNA170876 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE39429_RAW.tar |
2.0 Gb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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