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Series GSE35144 Query DataSets for GSE35144
Status Public on Jun 07, 2012
Title Molecular Evaluation of Patient-Derived Colorectal Cancer Explants as a Pre-clinical Mouse Model of Colorectal Cancer
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Mouse models have been developed to investigate colorectal cancer etiology and evaluate new anti-cancer therapies. While genetically engineered and carcinogen-induced mouse models have provided important information with regard to the mechanisms underlying the oncogenic process, xenograft models remain the standard for the evaluation of new chemotherapy and targeted drug treatments for clinical use. However, it remains unclear if drug efficacy data obtained from xenograft models translate into clinically-relevant treatment modalities. In this study, we have generated a panel of 28 patient-derived colorectal cancer explants (PDCCEs), an extension of our previous work, by direct transplantation of human colorectal cancer (CRC) tissues into NOD-SCID mice. A comprehensive histological and molecular evaluation of PDCCEs and their corresponding patient tumor demonstrates that PDCCEs maintain histological features and global biology through multiple passages. Furthermore, we demonstrate that in vivo sensitivity of PDCCEs to oxaliplatin can predict patient outcomes. Our findings suggest that PDCCEs maintain similarity to the patient tumor from which they are derived and can serve as a reliable preclinical model that can be incorporated into future strategies to optimize individual therapy for patients with CRC.
 
Overall design 28 human primary colorectal and 37 mouse derived colorectal explant tumors
 
Contributor(s) Uronis J, Hsu DS, Osada T, McCall S, Yang XY, Mantyh C, Morse MA, Lyerly HK, Clary BM
Citation(s) 22675560
Submission date Jan 17, 2012
Last update date Mar 25, 2019
Contact name David Hsu
Organization name Duke University
Department Medical Oncology
Street address 905 S. LaSalle St. Rm 3008
City Durham
State/province NC
ZIP/Postal code 27710
Country USA
 
Platforms (1)
GPL570 [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array
Samples (64)
GSM862441 HumanTumor_FreshFrozen_CRC028A
GSM862442 HumanTumor_FreshFrozen_CRC039A
GSM862443 HumanTumor_FreshFrozen_CRC057A
Relations
BioProject PRJNA150711

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE35144_RAW.tar 328.0 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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