|
| Status |
Public on Jul 22, 2013 |
| Title |
Autotoxicity mechanism of Oryza Sativa: Microarray analysis of rice plants in response to allelochemical ferulic acid |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
|
| Summary |
Autotoxicity plays an important mechanism in regulating plant productivity. Ferulic acid (FA) is phytotoxic and was identified in extracts and residues of rice plants as a candidate for rice allelochemicals. To help characterize the autotoxicity mechanism of rice, we present the first large-scale, transcriptomic analysis of rice root responses to ferulic acid.
|
| |
|
| Overall design |
Two-condition experiment, short exposures and long exposures. Comparison of mock control and rice seedlings treated with 50 ppm ferulic acid (FA) during short (pooled from 1- and 3-h treatments), as compared to long (24 h) exposures.; Biological replicates: 3 control replicates (short and long exposures), 3 FA-treated replicates (short and long exposures).
|
| |
|
| Contributor(s) |
Chi W, Chen Y, Hsiung Y, Chou C, Huang H |
| Citation(s) |
23705659, 28115496 |
| Submission date |
Jan 06, 2012 |
| Last update date |
Feb 24, 2017 |
| Contact name |
Wen-Chang Chi |
| E-mail(s) |
wenji0918177774@yahoo.com.tw
|
| Phone |
+886918177774
|
| Organization name |
National Cheng Kung University
|
| Department |
Life Science
|
| Lab |
Prof. Huang Hao-Jen
|
| Street address |
No.1, University Road, Tainan City
|
| City |
Tainan |
| State/province |
Taiwan |
| ZIP/Postal code |
701 |
| Country |
Taiwan |
| |
|
| Platforms (1) |
| GPL8852 |
Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version) |
|
| Samples (6)
|
| GSM857287 |
Rice seedlings roots_FA short exposures Replicate 1 |
| GSM857288 |
Rice seedlings roots_FA short exposures Replicate 2 |
| GSM857289 |
Rice seedlings roots_FA short exposures Replicate 3 |
| GSM857290 |
Rice seedlings roots_FA long exposures Replicate 1 |
| GSM857291 |
Rice seedlings roots_FA long exposures Replicate 2 |
| GSM857292 |
Rice seedlings roots_FA long exposures Replicate 3 |
|
| Relations |
| BioProject |
PRJNA150185 |
Less...
More...