|
| Status |
Public on Jan 22, 2016 |
| Title |
Comparative early transcriptomic responses to copper and cadmium exposure in rice roots |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
|
| Summary |
The aim of this study is to do a side-by-side comparison of the transcriptomes that are regulated under Cu and Cd stress at the early stage in rice roots. The comparison of transcriptomes between Cu and Cd treatments and the application of bioinformatics procedures (e.g. regulated gene analysis) are potentially useful approaches for determining the both general and individual early responses triggered by each metal.
Identify genes and pathways that would discriminate among the actions of Cu and Cd.
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| |
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| Overall design |
Comparison of mock control and rice seedlings treated with 5μM Cu and 25μM Cd; Biological replicates: 3 control replicates, 3 Cu-treated replicates, 3 Cd-treated replicates
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| |
|
| Contributor(s) |
Lin C, Hsiung Y, Chia L, Huang H |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jan 05, 2012 |
| Last update date |
Jan 22, 2016 |
| Contact name |
Chung-Yi Lin |
| E-mail(s) |
L5895101@mail.ncku.edu.tw
|
| Organization name |
National Cheng Kung University
|
| Street address |
No.1, University Road
|
| City |
Tainan City |
| ZIP/Postal code |
701 |
| Country |
Taiwan |
| |
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| Platforms (1) |
| GPL8852 |
Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version) |
|
| Samples (6)
|
| GSM857247 |
Rice seedlings roots Cu Replicate 1 |
| GSM857248 |
Rice seedlings roots Cu Replicate 2 |
| GSM857249 |
Rice seedlings roots Cu Replicate 3 |
| GSM857250 |
Rice seedlings roots Cd Replicate 1 |
| GSM857251 |
Rice seedlings roots Cd Replicate 2 |
| GSM857252 |
Rice seedlings roots Cd Replicate 3 |
|
| Relations |
| BioProject |
PRJNA150191 |
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