|
| Status |
Public on Jan 01, 2012 |
| Title |
Retrotransposon Ty1 integration targets specifically positioned asymmetric nucleosomal DNA segments in tRNA hotspots |
| Organism |
Saccharomyces cerevisiae |
| Experiment type |
Other
|
| Summary |
Using a TIP-seq protocol (specifically isolating transposon insertion junctions) we determined that the Ty1 retrotransposon targets tRNA genes and, in particular, we determined that the transposon inserts into nucleosomal DNA in an asymmetric pattern.
|
| |
|
| Overall design |
TIP-seq recovery of transposon insertion junctions in haploid and diploid yeast
|
| |
|
| Contributor(s) |
Boeke JD, Wheelan SJ |
| Citation(s) |
22219510 |
| Submission date |
Nov 28, 2011 |
| Last update date |
May 15, 2019 |
| Contact name |
Sarah Wheelan |
| Organization name |
Johns Hopkins University School of Medicine
|
| Department |
Oncology
|
| Street address |
550 N. Broadway
|
| City |
Baltimore |
| State/province |
MD |
| ZIP/Postal code |
21205 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL13272 |
Illumina Genome Analyzer IIx (Saccharomyces cerevisiae) |
|
| Samples (2) |
|
| Relations |
| SRA |
SRP009462 |
| BioProject |
PRJNA150613 |
