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| Status |
Public on Oct 21, 2012 |
| Title |
Transcriptome and signalling response to As stress |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
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| Summary |
Arsenic (As) is considered as the most common toxic metalloid, but its molecular mode of action is not well understood. In this study, we demonstrated that As(V) induced intracellular ROS production and Ca2+ accumulation in rice roots. To understand the molecular basis of plant cell responses to As better, we have undertaken a large-scale analysis of the rice transcriptome during As(V) stress. Up-regulated genes were enriched in transcripts involved in abiotic stress, chemical detoxification pathways, secondary metabolic process, transcription regulation and protein degradation while down-regulated genes were enriched in transcripts involved in secondary cell wall biogenesis, cell cycle and oligopeptide transporter.
Molecular mechanisms for the As(V) in rice roots
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| Overall design |
Comparison of mock control and rice seedlings treated with 25 μM As(V); Biological replicates: 3 control replicates, 3 As(V)-treated replicates.
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| Contributor(s) |
Huang T, Huang H |
| Citation(s) |
22987115 |
| Submission date |
Nov 01, 2011 |
| Last update date |
Jan 09, 2014 |
| Contact name |
Tsai-Lien Huang |
| E-mail(s) |
l5893106@gmail.com
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| Phone |
+886933375382
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| Fax |
+88662742583
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| Organization name |
National Cheng Kung University
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| Department |
Life Sciences
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| Lab |
Prof. Huang Hao-Jen
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| Street address |
No.1, University Raod,
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| City |
Tainan |
| State/province |
Taiwan |
| ZIP/Postal code |
701 |
| Country |
Taiwan |
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| Platforms (1) |
| GPL8852 |
Agilent-015241 Rice Gene Expression 4x44K Microarray (Probe name version) |
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| Samples (3) |
| GSM825525 |
Rice seedlings roots_As(V) Replicate 1 |
| GSM825526 |
Rice seedlings roots_As(V) Replicate 2 |
| GSM825527 |
Rice seedlings roots_As(V) Replicate 3 |
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| Relations |
| BioProject |
PRJNA149149 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE33375_RAW.tar |
42.7 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
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