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Series GSE267318 Query DataSets for GSE267318
Status Public on May 16, 2024
Title Increase in ER-mitochondria contacts and mitochondrial fusion are hallmarks of mitochondrial activation during embryogenesis
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary Mitochondrial energy production is essential for development, yet the mechanisms underlying the continuous increase in mitochondrial activity during embryogenesis remain elusive. Using zebrafish as a model system for vertebrate development, we identify two sequentially acting mechanisms that could contribute to the rise in mitochondrial activity: an increased association between mitochondria and the endoplasmic reticulum (ER) at early stages, followed by the fusion of mitochondria leading to their elongated morphology at later embryonic stages. By comprehensively profiling mitochondrial activity, abundance, morphology, metabolome, proteome and phospho-proteome as well as respiratory chain enzymatic activity, we find that the increase in mitochondrial activity during embryogenesis does not require mitochondrial biogenesis, is not limited by metabolic substrates at early stages, and occurs under steady levels of respiratory chain complexes and enzymatic activities. Instead, our analyses pinpoint a previously unexplored increase in mitochondrial-ER association during early stages in combination with changes in mitochondrial morphology at later stages as possible contributors to the rise in mitochondrial activity during embryogenesis. Overall, our systematic profiling of the molecular and morphological changes to mitochondria during embryogenesis provides a valuable resource for further studying mitochondrial function during embryogenesis.
 
Overall design To investigate whether oligomycin-treated embryos, we performed RNA-seq experiment to detect ZGA genes. As a control we used untreated and actinomycin-injected embryos to block zygotic transcription.
 
Contributor(s) Chugunova A, Kobylinska R
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Submission date May 13, 2024
Last update date May 16, 2024
Contact name Anastasia Chugunova
E-mail(s) anastasia.chugunova@imp.ac.at
Organization name IMP
Lab Pauli
Street address Campus-Vienna-Biocenter 1
City Vienna
ZIP/Postal code 1030
Country Austria
 
Platforms (1)
GPL30614 NextSeq 2000 (Danio rerio)
Samples (24)
GSM8263844 untreated_3h-239858
GSM8263845 actinomycinD_3h-239859
GSM8263846 oligomycin_3h-239862
Relations
BioProject PRJNA1111056

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Supplementary file Size Download File type/resource
GSE267318_RAW.tar 2.8 Mb (http)(custom) TAR (of TSV)
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Raw data are available in SRA

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