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Series GSE260875 Query DataSets for GSE260875
Status Public on Mar 05, 2024
Title EPA Transcriptomic Assessment Product (ETAP) for Perfluoro-3-Methoxypropanoic Acid
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary The EPA Transcriptomic Assessment Product (ETAP) is a human health assessment that utilizes a standardized short-term in vivo study design and data analysis procedures to develop transcriptomic-based reference values for data poor chemicals. The reference value represents the daily dose of the chemical that would likely be without appreciable risk to human health over a lifetime. This dataset corresponds to the transcriptomic studies on perfluoro-3-methoxypropanoic acid (DTXSID70191136). More information about ETAP is available at: https://www.epa.gov/etap
 
Overall design A 5-day repeated dose exposure study for perfluoro-3-methoxypropanoic acid was performed in both male and female Sprague Dawley rats separated into 9 dose groups plus vehicle control animals. The vehicle was deionized water and route of exposure was oral gavage (5 ml/kg). Tissues were removed and preserved 24 hours following the last dose. Transcriptomic measurements were performed using targeted RNA sequencing in kidney, liver, adrenal gland, brain, heart, lung, ovary (females), spleen, testis (males), thyroid, thymus, and uterus (females). More details on the study design are available at: https://0-doi-org.brum.beds.ac.uk/10.23645/epacomptox.25352962
 
Contributor(s) Auerbach S, Brennan A, Casey W, Chang D, Cowden J, Davidson-Fritz S, Dean J, DeVito M, Ford J, Everett L, Harrill A, Hester S, Hughes M, Lambert J, Lizarraga L, Mezencev R, Macmillan D, Patlewicz G, Reyner A, Thayer K, Thomas R, Vitense K, Wehmas L
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Submission date Mar 05, 2024
Last update date Mar 06, 2024
Contact name Logan J Everett
Organization name U.S. Environmental Protection Agency
Department Office of Research and Development
Lab Center for Computational Toxicology and Exposure
Street address 109 T.W. Alexander Dr
City RTP
State/province North Carolina
ZIP/Postal code 27711
Country USA
 
Platforms (1)
GPL18694 Illumina HiSeq 2500 (Rattus norvegicus)
Samples (1090)
GSM8126243 Male Liver, Vehicle Control, Animal 107
GSM8126244 Male Liver, Vehicle Control, Animal 108
GSM8126245 Male Liver, Vehicle Control, Animal 109
Relations
BioProject PRJNA1083898

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE260875_etap_mopa_adrenal_female_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_adrenal_male_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_brain_female_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_brain_male_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_heart_female_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_heart_male_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_kidney_female_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_kidney_male_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_liver_female_counts.csv.gz 42.3 Mb (ftp)(http) CSV
GSE260875_etap_mopa_liver_male_counts.csv.gz 42.3 Mb (ftp)(http) CSV
GSE260875_etap_mopa_lung_female_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_lung_male_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_ovary_female_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_spleen_female_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_spleen_male_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_testes_male_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_thymus_female_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_thymus_male_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_thyroid_female_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_thyroid_male_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_etap_mopa_uterus_female_counts.csv.gz 42.4 Mb (ftp)(http) CSV
GSE260875_rat_s1500_v1.2_probes.csv.gz 68.4 Kb (ftp)(http) CSV
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