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Series GSE254438 Query DataSets for GSE254438
Status Public on May 13, 2024
Title Hepatic BMAL1 and HIF1a regulate a time-dependent hypoxic response and their absence leads to Hepatopulmonary Syndrome II
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The transcriptional response to hypoxia is temporally regulated yet the molecular underpinnings and physiological implications are unknown. We examined herein the roles of hepatic Bmal1 and Hif1a in the circadian response to hypoxia in mice. We found that the majority of the transcriptional response to hypoxia is dependent on Bmal1 or Hif1a, through shared and distinct roles that are daytime determined. We further show that HIF1a accumulation upon hypoxia is temporally regulated and Bmal1-dependent. Unexpectedly, mice lacking both hepatic Bmal1 and Hif1a are hypoxemic and exhibit increased mortality upon hypoxic exposure in a daytime-dependent manner. These mice display mild liver dysfunction with pulmonary vasodilation likely due to ERK activation, endothelial nitric oxide synthase and nitric oxide accumulation in lungs, suggestive of hepatopulmonary syndrome. Our findings indicate that hepatic BMAL1 and HIF1a are key time-dependent regulators of the response to hypoxia and provide molecular insight on the pathophysiology of hepatopulmonary syndrome.
 
Overall design RNA-sequencing on livers of AlbCRE, HLKO or BLKO mice exposed to 4 hour normoxia (21% oxygen) or hypoxia (6% hypoxia) at CT4-8 or CT16-20. Lights were turned off at the transition of dark to light regiment on the day of the experiment, following regular LD regimen.
 
Contributor(s) Dandavate V, Golik M, Asher G
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Submission date Jan 29, 2024
Last update date May 13, 2024
Contact name Vaishnavi Dandavate
E-mail(s) vaishnavi16496@gmail.com
Phone +972587982981
Organization name Weizmann Institute of Science
Department Biomolecular Sciences
Lab Gad Asher Lab
Street address 26B Arthur Ruppin street
City Rehovot
ZIP/Postal code 7610001
Country Israel
 
Platforms (1)
GPL21626 NextSeq 550 (Mus musculus)
Samples (39)
GSM8042209 Alb_CT4_21A
GSM8042210 Alb_CT4_21B
GSM8042211 Alb_CT4_21C
Relations
BioProject PRJNA1070580

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Supplementary file Size Download File type/resource
GSE254438_AlbCRE_HLKO_BLKO_Hypoxia_RNASeq_reads.xlsx 7.6 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA

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