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Series GSE243993 Query DataSets for GSE243993
Status Public on Sep 29, 2023
Title Molecular blueprints for spinal circuit modules controlling locomotor speed
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary The flexibility of motor actions is ingrained in the diversity of neurons and how they are organized into functional circuit modules, yet our knowledge of the molecular underpinning of motor circuit modularity remains limited. Locomotion is a motor behavior characterized by sudden changes in speed and strength enabled by the coordinated recruitment of different motoneuron subtypes. Here we use adult zebrafish to link the molecular diversity of motoneurons and the rhythm-generating V2a interneurons with their modular circuit organization that is responsible for changes in locomotor speed. We show that the molecular diversity of motoneurons and V2a interneurons reflects their functional segregation into slow, intermediate or fast subtypes. Furthermore, we reveal shared molecular signatures between V2a interneurons and motoneurons of the three speed circuit modules. Overall, by characterizing how the molecular diversity of motoneurons and V2a interneurons relates to their function, connectivity and behavior, our study provides important insights not only into the molecular mechanisms for neuronal and circuit diversity for locomotor flexibility but also for charting circuits for motor actions in general.
 
Overall design To determine whether the functional subtypes of motoneurons and V2a (Chx10+) interneurons are molecularly distinct, we performed single-cell RNA sequencing respectively on adult islet1a:GFP and chx10:GFP transgenic zebrafish using SmartSeq2.
Web link https://0-www-nature-com.brum.beds.ac.uk/articles/s41593-023-01479-1
 
Contributor(s) Pallucchi I, Bertuzzi M, Madrid D, Fontanel P, Higashijima S, El Manira A
Citation(s) 37919423
Submission date Sep 25, 2023
Last update date Jan 04, 2024
Contact name Abdel El Manira
Organization name Karolinaska Institutet
Department Neuroscience
Street address Solnavagen 9
City Stockholm
ZIP/Postal code 171 65
Country Sweden
 
Platforms (1)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
Samples (1536)
GSM7802912 MN_sample1_358_A1_R1
GSM7802913 MN_sample1_358_A2_R1
GSM7802914 MN_sample1_358_A3_R1
Relations
BioProject PRJNA1020854

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE243993_174.multiqc_star.txt.gz 22.6 Kb (ftp)(http) TXT
GSE243993_174.sample_info.csv.gz 758 b (ftp)(http) CSV
GSE243993_174_counts.csv.gz 3.2 Mb (ftp)(http) CSV
GSE243993_358.354.353.merge_counts.csv.gz 7.7 Mb (ftp)(http) CSV
GSE243993_358.354.353.multiqc_star.txt.gz 66.7 Kb (ftp)(http) TXT
GSE243993_358.354.353.sample_info.csv.gz 2.0 Kb (ftp)(http) CSV
GSE243993_Integrated_MN_V2a.rds.gz 33.7 Mb (ftp)(http) RDS
GSE243993_MN.rds.gz 58.2 Mb (ftp)(http) RDS
GSE243993_V2a.rds.gz 26.5 Mb (ftp)(http) RDS
SRA Run SelectorHelp
Raw data are available in SRA

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