NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE227998 Query DataSets for GSE227998
Status Public on May 16, 2024
Title TET2 Promotes Tumor Antigen Presentation and T Cell-Directed Tumor Cell Cytotoxicity Which is Enhanced by Vitamin C Treatment
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Immune evasion by tumors is promoted by low T cell infiltration, an immunosuppressive tumor microenvironment, poor T cell activity directed against the tumor, and reduced tumor antigen presentation. We showed previously that tumor expression of the DNA dioxygenase TET2 enhances recruitment of T cells through activating the expression of CXCL9, 10 and 11. Vitamin C treatment was shown to increase these effects in a TET2 dependent manner. Using scSeq analysis, we show that an additional function for TET2 in tumors is to enhance the expression of genes involved in antigen presentation, including those encoding H-2 MHC proteins, B2M, TAP1, TAPBP, and components of immunoproteasome. Using the B16-OVA melanoma model, we show that antigen expression in tumors is blocked if TET2 expression is eliminated and that vitamin C further promotes tumor antigen presentation in a TET2-dependent manner. Consistently, T cell killing assays demonstrate that effective killing of tumor by antigen-specific T cells requires TET2 expression in the tumor cells. Analysis of patient tumor samples indicates that TET2 activity, as measured through 5hmC levels, correlates directly with expression of antigen-presentation gene expression and with patient outcomes.
 
Overall design WT or TET2-KO B16-OVA melanoma cells were transplanted to C57BL/6 syngeneic mice and then treated with PBS or 1g/kg Vitamin C (I.V.) for 2 weeks starting from Day 6. Tumor tissues were then collected and single cell population were isolated for single-cell RNA Seq using 10X Genomics NGS.
 
Contributor(s) Cheng M, Chu A, Welch J, Baldwin A
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 22, 2023
Last update date May 16, 2024
Contact name Meng Cheng
E-mail(s) chengmeng930817@gmail.com
Phone 9198690473
Organization name UNC-CH
Department Lineberger Cancer Center
Lab The Baldwin Lab
Street address 107 Pinegate Cir, Apt 9
City Chapel Hill
State/province NC
ZIP/Postal code 27514
Country USA
 
Platforms (1)
GPL30172 NextSeq 2000 (Mus musculus)
Samples (12)
GSM7112102 WT_B16-OVA_PBS_1-0_Biol Rep 1
GSM7112103 WT_B16-OVA_PBS_1-1_Biol Rep 2
GSM7112104 WT_B16-OVA_PBS_1-2_Biol Rep 3
Relations
BioProject PRJNA947645

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE227998_RAW.tar 9.0 Gb (http)(custom) TAR (of H5)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap