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| Status |
Public on Sep 20, 2022 |
| Title |
RNA-seq of microglia from 3-dpf siblings, mafba and mafbb single mutant and DMut zebrafish |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
In order to search for the downstream target genes of Mafba and Mafbb, we isolated microglia (3 cells per sample) from 3-dpf zebrafish brain of siblings, mafba and mafbb single mutants and DMut under Tg(mpeg1:DsRedx) transgenic background (3 samples per genotype), respectively, and then performed RNA sequencing.
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| Overall design |
Comparative gene expression profiling analysis of RNA-seq data of microglia from 3-dpf siblings, mafba and mafbb single mutants and DMut
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| Contributor(s) |
Lou L, Yu T, Dai Y, Zhao S, Feng S, Xu J, Wen Z |
| Citation(s) |
36122226 |
| Submission date |
Sep 11, 2022 |
| Last update date |
Sep 21, 2022 |
| Contact name |
LIANG LOU |
| E-mail(s) |
llou@connect.ust.hk
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| Organization name |
HKUST
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| Department |
LIFS
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| Street address |
HKUST
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| City |
Hong Kong |
| ZIP/Postal code |
000000 |
| Country |
China |
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| Platforms (1) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
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| Samples (12)
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| GSM6573148 |
microglia, mafba, rep1 |
| GSM6573149 |
microglia, mafba, rep2 |
| GSM6573150 |
microglia, mafba, rep3 |
| GSM6573151 |
microglia, mafbb, rep1 |
| GSM6573152 |
microglia, mafbb, rep2 |
| GSM6573153 |
microglia, mafbb, rep3 |
| GSM6573154 |
microglia, DMut, rep1 |
| GSM6573155 |
microglia, DMut, rep2 |
| GSM6573156 |
microglia, DMut, rep3 |
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| Relations |
| BioProject |
PRJNA879221 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE213126_Raw_gene_counts_matrix.csv.csv.gz |
348.5 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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