NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE211345 Query DataSets for GSE211345
Status Public on Aug 09, 2023
Title Identification of responsible genes of HCC after sustained virological response to hepatitis C virus
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Risk of hepatocellular carcinoma (HCC) remains after sustained virological response (SVR) in patients with chronic hepatitis C (CHC). Epigenetic abnormalities might be key regulators in the development of HCC. This study aimed to identify the genes involved in hepatocarcinogenesis after SVR. DNA methylation in liver tissues was compared between 21 CHC patients without HCC and 28 CHC patients with HCC, all of whom had achieved SVR. Through additional comparisons with 23 CHC patients before treatment and 10 normal livers, we found that the several genes were methylated and demethylated by HCV infection and the development of HCC after achieving SVR.
 
Overall design DNA methylation in liver tissues was compared between 21 CHC patients without HCC and 28 CHC patients with HCC, all of whom had achieved SVR. We performed additional comparisons with 23 CHC patients before treatment and 10 normal livers.
 
Contributor(s) Nishikawa M, Okada H, Honda M
Citation(s) 37146715
Submission date Aug 16, 2022
Last update date Aug 10, 2023
Contact name Masao Honda
E-mail(s) mhondag@gmail.com
Phone 0762652243
Organization name Kanazawa University
Department Gastroenterology
Street address Takara-Machi 13-1
City Kanazawa
ZIP/Postal code 920-8641
Country Japan
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (82)
GSM6467021 Sample: 1 [Control]
GSM6467022 Sample: 2 [Control]
GSM6467023 Sample: 3 [Control]
Relations
BioProject PRJNA869928

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE211345_Matrix_processed_data_table.txt.gz 165.5 Mb (ftp)(http) TXT
GSE211345_Matrix_raw_data.txt.gz 176.6 Mb (ftp)(http) TXT
GSE211345_RAW.tar 183.1 Mb (http)(custom) TAR
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap