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| Status |
Public on Mar 16, 2022 |
| Title |
Platinum-sensitive HGOC residual tumors share joint expression of CRYAB, CEACAM6, SOX2 genes with tumors that acquired resistance |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Purpose: Most High-Grade Ovarian Carcinomas (HGOCs) are sensitive to carboplatin (CBP)-based chemotherapy but frequently recur within 24 months. Recurrent tumors remain frequently CBP-sensitive and acquire resistance after several CBP cycles. We developed Patient-Derived Xenografts (PDXs) that allow the study of these different stages of CBP-sensitive recurrence and acquisition of resistance.
Experimental Design: We generated PDX models from CBP-sensitive HGOC. PDXs were CBP- or mock-treated and tumors were sampled, after treatment and at recurrence. We also isolated models with acquired-resistance from CBP-sensitive PDXs upon repeated CBP treatment. Tumors were characterized transcriptome levels by Affymetrix microarrays.
Results: All PDX models reproduced treatment response seen in the patients. CBP-sensitive residual tumors contained non-proliferating tumor cells clusters embedded in a fibrotic mesh. This was absent in CBP-resistant tumors. Residual tumors had marked differences in gene expression when compared to naïve and recurrent tumors, indicating downregulation of cell cycle and proliferation and upregulation of interferon response and epithelial–mesenchymal transition. This gene expression pattern resembled that seen in embryonal diapause and ‘drug-tolerant persister’ states. Residual and acquired-resistance tumors share the overexpression of three genes – CEACAM6, CRYAB, and SOX2.
Conclusions: In HGOC PDX, CBP-sensitive recurrences arise from a small population of quiescent, drug-tolerant, residual cells embedded in a fibrotic mesh. These cells overexpress CEACAM6, CRYAB and SOX2, a signature also associated with acquired resistance and poor patient prognosis
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| Overall design |
design 1 : To analyze residual cells after treatment of 3 CBP-sensitive Patient-Derived Xenografts (PDX), using Affymetrix microarrays, for a total of 12 samples (2 mock-treated biological duplicates and 2 CBP-treated biological duplicates X 3 PDX models).
design 2: Patient-Derived Xenografts (PDX) were analyzed using Affymetrix microarrays,in naive(nai), after recurrence (regrowth=reg), or after acquired-resistance(resis) following several cycle of CBP treatments.
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| Contributor(s) |
du Manoir S, Theillet C, Sardet C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Mar 15, 2022 |
| Last update date |
Mar 18, 2022 |
| Contact name |
stanislas P du manoir |
| E-mail(s) |
stanislas.dumanoir@inserm.fr
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| Organization name |
IRCM
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| Lab |
Genetic and phenotypic plasticity of cancer team
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| Street address |
280 rue des apothicaires
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| City |
montpellier |
| ZIP/Postal code |
34298 |
| Country |
France |
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| Platforms (1) |
| GPL13158 |
[HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate |
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| Samples (20)
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| GSM5955381 |
PDX O1047, CBP treated, rep2 |
| GSM5955382 |
PDX O3312, mock treated, rep1 |
| GSM5955383 |
PDX O3312, mock treated, rep2 |
| GSM5955384 |
PDX O3312, CBP treated, rep1 |
| GSM5955385 |
PDX O3312, CBP treated, rep2 |
| GSM5955386 |
PDX O5588, mock treated, rep1 |
| GSM5955387 |
PDX O5588, mock treated, rep2 |
| GSM5955388 |
PDX O5588, CBP treated, rep1 |
| GSM5955389 |
PDX O5588, CBP treated, rep2 |
| GSM5955390 |
PDX O3312, untreated, rep1 |
| GSM5955391 |
PDX O3312, treated regrowth |
| GSM5955392 |
PDX O3312, acq resistance, rep1 |
| GSM5955393 |
PDX O3312, acq resistance, rep2 |
| GSM5955394 |
PDX O8378, untreated, rep1 |
| GSM5955395 |
PDX O8378, treated regrowth |
| GSM5955396 |
PDX O8378, acq resistance, rep1 |
| GSM5955397 |
PDX O8378, acq resistance, rep2 |
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| Relations |
| BioProject |
PRJNA816496 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE198701_RAW.tar |
42.5 Mb |
(http)(custom) |
TAR (of CEL) |
| GSE198701_stanislas.dumanoirFinalTable.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
| Processed data included within Sample table |
| Processed data are available on Series record |
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