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Series GSE19465 Query DataSets for GSE19465
Status Public on Jan 06, 2010
Title BI Human Reference Epigenome Mapping Project: ChIP-Seq in human subject
Project Roadmap Epigenomics
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary The NIH Roadmap Epigenomics Mapping Consortium aims to produce a public resource of epigenomic maps for stem cells and primary ex vivo tissues selected to represent the normal counterparts of tissues and organ systems frequently involved in human disease.


Characterization of chromatin modification by ChIP-Seq in human subject.

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For data usage terms and conditions, please refer to:
http://www.drugabuse.gov/funding/funding-opportunities/nih-common-fund/epigenomics-data-access-policies
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Overall design BI Human Reference Epigenome Mapping Project - samples and experiments will continue to be added to this study over the course of the project.

EDACC Genboree Page:
http://genboree.org/java-bin/project.jsp?projectName=XML%20Submissions%2FBroad%2FSTUDY%2FEDACC.1561
Web link http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/geo/roadmap/epigenomics/
 
Contributor(s) Bernstein BE, Meissner A
Citation(s) 20944595
BioProject PRJNA34535
Submission date Dec 14, 2009
Last update date Nov 05, 2019
Contact name BROAD INSTITUTE
E-mail(s) rharris1@bcm.tmc.edu
Organization name Broad Institute
Street address -
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platforms (2)
GPL9115 Illumina Genome Analyzer II (Homo sapiens)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (358)
GSM486702 ChIP-Seq analysis of WCE in human CD34 cells, 30CAVAAXX081115-2-S
GSM486704 ChIP-Seq analysis of H3K27me3 in human CD34 cells, 30CAVAAXX081115-1-S
GSM486705 ChIP-Seq analysis of H3K36me3 in human CD34 cells, 30CAVAAXX081115-8-S
Relations
SRA SRP001534

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE19465_RAW.tar 134.0 Gb (http)(custom) TAR (of BED, WIG)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA
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