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Series GSE188231 Query DataSets for GSE188231
Status Public on Nov 06, 2021
Title MCLR-elicited hepatic fibrosis and carcinogenic gene expression changes persist in rats with diet-induced nonalcoholic steatohepatitis through a 4-week recovery period
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Nonalcoholic steatohepatitis (NASH) causes liver extracellular matrix (ECM) remodeling and is a risk factor for fibrosis and hepatocellular carcinoma (HCC). Microcystin-LR (MCLR) is a hepatotoxin produced by fresh-water cyanobacteria that causes a NASH-like phenotype, liver fibrosis, and is also a risk factor for HCC. The focus of the current study was to investigate and compare hepatic recovery after cessation of MCLR exposure in healthy versus NASH animals. Male Sprague-Dawley rats were fed either a control or a high fat/high cholesterol (HFHC) diet for eight weeks. Animals received either vehicle or 30 µg/kg MCLR (i.p: 2 weeks, alternate days). Animals were euthanized at one of three time points: at the completion of the MCLR exposure period and after 2 and 4 weeks of recovery. Histological staining suggested that after four weeks of recovery the MCLR-exposed HFHC group had less steatosis and more fibrosis compared to the vehicle-exposed HFHC group and MCLR-exposed control group. RNA-Seq analysis revealed dysregulation of ECM genes after MCLR exposure in both control and HFHC groups that persisted only in the HFHC groups during recovery. After 4 weeks of recovery, MCLR hepatotoxicity in pre-existing NASH persistently dysregulated genes related to cellular differentiation and HCC. These data demonstrate impaired hepatic recovery and persistent carcinogenic changes after MCLR toxicity in pre-existing NASH.
 
Overall design Eight-week old male Sprague Dawley rats (n=72) were purchased from Envigo and were maintained in 12 hour light and dark cycles. Animals were divided into two groups (n=36 per diet group) and fed (ad-libitum) either a control diet or HFHC diet for 8 weeks. Following 8 week diet period, animals were administered vehicle or MCLR via intraperitoneal injections every 48 hours for 2 weeks. Animals were euthanized at three recovery time points: 24 hours (0 week recovery), 2 weeks (2 week recovery) and 4 weeks (4 week recovery) (n=6 per diet and treatment group) after the last MCLR administration.
 
Contributor(s) Clarke JD, Baron JA, Arman T, Lynch KD
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Submission date Nov 04, 2021
Last update date Nov 06, 2021
Contact name John D. Clarke
E-mail(s) j.clarke@wsu.edu
Organization name Washington State University
Department Pharmaceutical Sciences
Lab Clarke Lab
Street address 412 E. Spokane Falls Blvd., 412 E. Spokane Fall BLVD
City Spokane
State/province Washington
ZIP/Postal code 99202
Country USA
 
Platforms (1)
GPL18694 Illumina HiSeq 2500 (Rattus norvegicus)
Samples (72)
GSM5672727 425
GSM5672728 426
GSM5672729 433
Relations
BioProject PRJNA777952
SRA SRP344641

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE188231_DGE_tWsN-VST-ctrl_veh_median_normalized.csv.gz 6.3 Mb (ftp)(http) CSV
GSE188231_DGE_tWsN_results.csv.gz 2.0 Mb (ftp)(http) CSV
GSE188231_trim99_recovery.fCounts.csv.gz 4.2 Mb (ftp)(http) CSV
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Raw data are available in SRA
Processed data are available on Series record

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