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Series GSE172418 Query DataSets for GSE172418
Status Public on Apr 21, 2021
Title TCDD exposure in control and wfikkn1mutant zebrafish at 48 hpf
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary This experiment investigates the role of a novel AHR-regulated gene on the global transcriptome in 48 hpf zebrafish exposed to 0.1% DMSO or 1 ng/mL TCDD.
 
Overall design Each biological sample consisted of 9 embryos with 4 biological replicates per condition, for a total of 16 samples
 
Contributor(s) Shankar P, Tanguay RL, Sullivan CM
Citation(s) 35377459
Submission date Apr 20, 2021
Last update date Aug 02, 2022
Contact name Christopher Michael Sullivan
Organization name Oregon State University
Department Environmental & Molecular Toxicology
Lab Robert L. Tanguay
Street address Sinnhuber Aquatic Research Laboratory, 28645 East HWY 34
City Corvallis
State/province OR
ZIP/Postal code 97333
Country USA
 
Platforms (1)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
Samples (16)
GSM5255619 WT-DMSO-rep1_S1
GSM5255620 WT-DMSO-rep2_S2
GSM5255621 wfikkn1-mut-DMSO-rep1_S3
Relations
BioProject PRJNA723280
SRA SRP315553

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172418_Count_matrix.txt.gz 621.5 Kb (ftp)(http) TXT
GSE172418_WT_TCDD--WT_DMSO_log2-1_sig_log_ratios.xlsx 332.5 Kb (ftp)(http) XLSX
GSE172418_wfikkn1-TCDD_GEO_Submission.xlsx 19.0 Kb (ftp)(http) XLSX
GSE172418_wfikkn1mut_DMSO--WT_DMSO_log2_sig_log_ratios.xlsx 373.5 Kb (ftp)(http) XLSX
GSE172418_wfikkn1mut_TCDD--WT_TCDD_log2_sig_log_ratios.xlsx 627.3 Kb (ftp)(http) XLSX
GSE172418_wfikkn1mut_TCDD--wfikkn1mut_DMSO_log2_sig_log_ratios.xlsx 833.6 Kb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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