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| Status |
Public on Apr 09, 2021 |
| Title |
The effect of DMD on THP1 macrophages in response to IMQ. |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
To clarify the role of DMD in macrophages in response to IMQ, we performed transcriptomic analysis by a Low Input Quick-Amp Labeling kit (Agilent Technologies, USA) from IMQ-induced THP1 macrophages with or without DMD treatment in vitro.
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| Overall design |
THP-1 was differentiated into macrophages by treating cells with 100 ng/ml of PMA for 24-36 h, followed by overnight incubation in fresh medium. THP1 cells were pretreated with DMD following in the presence of IMQ. 0.2 μg of total RNA was amplified by a Low Input Quick-Amp Labeling kit (Agilent Technologies, USA) Raw signal data was normalized by quantile normalization for differential expressed genes discovering.For functional assay, we provied enrichment test for differential expressed genes (For most model organisms). Welgen Biotech used clusterProfiler for enrichment test for gene ontology (GO) and pathway (KEGG).
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| Contributor(s) |
Chuang S |
| Citation(s) |
34054833 |
| Submission date |
Apr 08, 2021 |
| Last update date |
Jun 03, 2021 |
| Contact name |
Shih-Yi Chuang |
| E-mail(s) |
clemencechuang@gmail.com
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| Phone |
+976232300
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| Organization name |
Chang Gung University
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| Street address |
No.259, Wenhua 1st Rd., Guishan Dist.
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| City |
Taoyuan City |
| ZIP/Postal code |
33302 |
| Country |
Taiwan |
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| Platforms (1) |
| GPL21185 |
Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Probe Name Version] |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA720534 |
