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Series GSE17031 Query DataSets for GSE17031
Status Public on Mar 01, 2011
Title Tasquinimod, a Quinoline-3-Carboxamide Anti-Angiogenic Agent, treated Prostate Cancer Cell Line in-vivo and in-vitro
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The quinoline-3-carboxamide ABR-215050 (Tasquinimod (INN)), exhibits anti-tumor activity via inhibition of tumor angiogenesis in human and rodent tumors. To further explore the mode of action of ABR-215050, in vivo experiments with gene microarray analysis were performed using samples of LNCaP prostate tumors excised from nude mice exposed to ABR-215050 for 24h at 10 mg/kg(ad.lib.). The array data were validated by real-time PCR (sqRT-PCR), as well as by protein expression experiments. Among several significant differentially expressed gene after exposure to ABR-215050, were cytokine receptor CXCR4, cytochrome P450 1A1 (CYP1A1), thrombospondin-1 (THBS1) and Lysyloxidase preprotein (LOX).

To further explore the mode of action of ABR-215050, in vitro experiments with gene microarray analysis were performed using LNCaP prostate tumor cells. The array data were validated by real-time PCR (sqRT-PCR), as well as by protein expression experiments. One of the most significant differentially expressed genes after exposure to ABR-215050, was thrombospondin-1 (THBS1).
 
Overall design 2-color treatment vs. control microarray experiment comprising four biological replicates. Each biological replicate was hybridized with dye-swap; resulting in eight hybridizations for each dataset (in vitro and in vivo), for a total of 16 hybridizations.
 
Contributor(s) Olsson A, Björk A, Vallon-Christersson J, Isaacs JT, Leanderson T
Citation(s) 20470445
Submission date Jul 09, 2009
Last update date Mar 21, 2012
Contact name Johan Vallon-Christersson
Organization name Lund University
Department Department of Oncology, Clinical Sciences
Street address Lund University
City Lund
ZIP/Postal code SE-221 85
Country Sweden
 
Platforms (2)
GPL5186 SWEGENE H_v3.0.1 35K
GPL5886 SWEGENE H_v2.1.1_27k
Samples (8)
GSM426047 In vivo exp 1 LNCaP 10mg kg ABR-215050 24h
GSM426048 In vivo exp 2 LNCaP 10mg kg ABR-215050 24h
GSM426049 In vivo exp 3 LNCaP 10mg kg ABR-215050 24h
Relations
BioProject PRJNA117795

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17031_CLONEID_in_vitro_expts.txt.gz 487.6 Kb (ftp)(http) TXT
GSE17031_CLONEID_in_vivo_expts.txt.gz 283.8 Kb (ftp)(http) TXT
GSE17031_RAW.tar 56.6 Mb (http)(custom) TAR (of GPR)
Processed data included within Sample table

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