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Series GSE168465 Query DataSets for GSE168465
Status Public on Sep 23, 2021
Title Primary brain cell infection by Toxoplasma gondii reveals the dynamics of spontaneous bradyzoite differentiation and the extend of modification of neuron biology after infection
Organisms Toxoplasma gondii; Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary Toxoplasma gondii is a eukaryotic parasite that form latent cyst in the brain of immunocompetent individuals. The latent parasites infection of the immune privileged central nervous system is linked to most complications. With no drug currently available to eliminate the latent cysts in the brain of infected hosts, the consequences of neurons long-term infection are unknown.. It has long been known that T. gondii specifically differentiate into a latent form (bradyzoite) in neurons, but how the infected neuron is responding to the infection remain to be elucidated. We have established a new in vitro model resulting in the production of fully mature bradyzoites cysts in brain cells. Using dual, host and parasite, RNA-seq we characterized the dynamics of differentiation of the parasite, revealing the involvement of key pathways in this process. Moreover, we identified how the infected brain cells responded to the parasite infection revealing the drastic changes that take place. We showed that neuronal specific pathways are strongly affected, with synapse signaling being particularly affected, especially glutamatergic synapse. The establishment of this new in vitro model allows to investigate both the dynamics of the parasite differentiation and the specific response of neurons to the long term infection by this parasite.
 
Overall design Three biological replicate of the mutant strain in presence and in abscence of Auxin. mRNA profiles iKD TgAP2IX-5 parasites was generated by high throughput sequencing using HiSeq 2500 system (Illumina).
 
Contributor(s) Gissot M, Mouveaux T, Huot L
Citation(s) 34610266
Submission date Mar 08, 2021
Last update date Nov 03, 2021
Contact name Mathieu Gissot
Organization name CNRS
Department CIIL- UMR 8204 - U1019
Lab Biology of Apicomplexan Parasites
Street address 1, rue du Pr. calmette
City Lille
ZIP/Postal code 59000
Country France
 
Platforms (3)
GPL18694 Illumina HiSeq 2500 (Rattus norvegicus)
GPL23377 Illumina HiSeq 2500 (Toxoplasma gondii)
GPL29822 Illumina HiSeq 2500 (Rattus norvegicus; Toxoplasma gondii)
Samples (21)
GSM5140933 infected primary brain cell 1d - 1
GSM5140934 infected primary brain cell 1d - 2
GSM5140935 infected primary brain cell 1d - 3
Relations
BioProject PRJNA707478
SRA SRP309740

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Supplementary file Size Download File type/resource
GSE168465_DESeq2-Rat-all-time-points.xlsx 2.0 Mb (ftp)(http) XLSX
GSE168465_DESeq2-Toxo-all-time-points.xlsx 3.7 Mb (ftp)(http) XLSX
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Raw data are available in SRA
Processed data are available on Series record

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