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| Status |
Public on Nov 19, 2020 |
| Title |
Novel role of miR-18a-5p and Galanin in rat lung ischemia-reperfusion mediated response |
| Organism |
Rattus norvegicus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Lung ischemia-reperfusion (IR) is known to occur after lung transplantation or cardiac bypass. IR leads to tissue inflammation and damage, is also associated with increased morbidity and mortality. Various receptors are known to partake in activation of innate immune system, but the downstream mechanism of tissue damage and inflammation is yet unknown. MicroRNAs (miRNA) are in the forefront in regulating ischemia reperfusion injury and are involved in inflammatory response. Here, we have identified by high throughput approach and evaluated distinct set of miRNAs that may play a role in response to IR in rat lung tissue. Top three differentially expressed miRNAs were validated through quantitative PCRs in the IR rat lung model and an in vitro model of IR of hypoxia and reoxygenation exposed type II alveolar cells. Among the miRNAs, miR-18a-5p showed consistent downregulation in both the model systems on IR. Cellular and molecular analysis brought to light a crucial role of this miRNA in ischemia reperfusion. MiR-18a-5p plays a role in IR mediated apoptosis, ROS production and regulates the expression of neuropeptide Galanin. It also influences the nuclear localization of transcription factor: Nuclear factor-erythroid 2 related factor (Nrf2) which in turn may regulate the expression of miR-18a gene. Thus, we have not only established a rat model for lung IR and enumerate the important miRNAs involved in IR but have also extensively characterized the role of miR-18a-5p in the same. This study will have important clinical and therapeutic implications for and during transplantation procedures.
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| Overall design |
The lung tissue of rats in sham operation group and lung ischemia-reperfusion group were conducted, using miRNA sequencing to find some differential expression in miRNA and target genes.
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| Contributor(s) |
Xiao K, Song L, Hu Y, He W, Hou F, Yan P, Xu J, Wang K, Tao Y, Li D, Xie L |
| Citation(s) |
34497682 |
| Submission date |
Nov 16, 2020 |
| Last update date |
Sep 15, 2021 |
| Contact name |
Kun Xiao |
| Organization name |
CHINESE PLA GENERAL HOSPITAL
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| Street address |
28 Fuxing Road, Haidian District
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| City |
Beijing |
| ZIP/Postal code |
100853 |
| Country |
China |
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| Platforms (1) |
| GPL18694 |
Illumina HiSeq 2500 (Rattus norvegicus) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA679273 |
| SRA |
SRP293113 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE161520_Readcount_TPM.txt.gz |
29.8 Kb |
(ftp)(http) |
TXT |
| GSE161520_hairpin.fa.gz |
1.7 Kb |
(ftp)(http) |
FA |
| GSE161520_hairpin.pos.gz |
956 b |
(ftp)(http) |
POS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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