NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE148869 Query DataSets for GSE148869
Status Public on Dec 31, 2022
Title Lung response to multi-walled carbon nanotube exposure in rats.
Organism Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Summary The projected increase in the production and use of nanomaterials is expected to result in a corresponding increase in human exposure, potentially resulting in significant morbidity and mortality. Currently, the lung toxicity of multi-walled carbon nanotubes (MWCNT), a prototype nanomaterial, was investigated in a rat model. The rats were exposed by whole-body inhalation to air (controls) or MWCNT (6 hours/day, 3 days) to result in cumulative doses of 180, 90, 45, 22.5, or 11.25 mg/m3. Lung toxicity and gene expression profiles were determined in the lungs of the control and MWCNT exposed rats one day following termination of the exposures. Moderate lung histological changes, indicative of toxicity, were detected in rats exposed to MWCNT at doses > 45 mg/m3. Changes in toxicity parameters including, lactate dehydrogenase (LDH) activity, oxidant production, cell counts of phagocytes, and cytokine levels were detected in the bronchoalveolar lavage of rats exposed to > 22.5 mg/m3 MWCNT, compared with the air controls. Lung gene expression profiling detected differences in transcript levels (fold change >1.5 and FDR p<0.05) of several genes in the rats exposed to >22.5 mg/m3 MWCNT, compared with the controls. The changes in lung toxicity and gene expression profiles exhibited a dose-response to the MWCNT administered in the rats.
 
Overall design Approximately 3 months old male Fischer rats (Charles River Laboratories, Wilmington, MA) were used in this study, conducted in an AAALAC International approved animal facility (NIOSH, Morgantown, WV) following a protocol approved by the NIOSH Animal Care and Use Committee. Rats were housed in groups of 3 rats/cage. The rats (n=6) were exposed by whole-body inhalation to MWCNT (6 hours/day, 3 days) to result in cumulative doses of 180, 90, 45, 22.5, or 11.25 mg/m3. Separate groups of rats (n=6) exposed simultaneously to filtered air served as the controls. One day following termination of exposure to air or multi-walled carbon nanotubes, the rats were euthanized, and lung gene expression profiles determined by RNA sequencing.
 
Contributor(s) Sager TM, Umbright CM, Joseph P
Citation(s) 35648795
Submission date Apr 17, 2020
Last update date Feb 10, 2023
Contact name Christina M Umbright
Organization name DHHS/PHS/CDC/NIOSH
Department HELD
Lab L-4324
Street address 1095 Willowdale Road
City Morgantown
State/province WV
ZIP/Postal code 26505
Country USA
 
Platforms (1)
GPL18694 Illumina HiSeq 2500 (Rattus norvegicus)
Samples (60)
GSM4484394 MW_045_025_AA
GSM4484395 MW_045_026_AA
GSM4484396 MW_045_027_AA
Relations
BioProject PRJNA625993
SRA SRP256969

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE148869_MW_Lung_hisatCounts_All.csv.gz 1.7 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap