 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Jun 17, 2021 |
| Title |
Genome-wide atlas of promoters expression reveals contribution of transcribed regulatory elements to genetic control of disuse-mediated atrophy of skeletal muscles |
| Organism |
Rattus norvegicus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Here we report genome wide estimation of expression profiles at promoter level in Soleus and EDL muscles in rat hindlimbs under unloading conditions.
|
| |
|
| Overall design |
Samples were collected from rat hindlimbs at normal state, after unloading for 24 hours, 3 days, 7 days; recovery after 7 days unloading for 24 hours, 3 days, 7 days. Extracted total RNA were proceeded into cDNA and submitted to nAnTi-CAGE libraries preparation with subsequent sequencing on Illumina HiSeq2500 (SE, 50bp)
|
| |
|
| Contributor(s) |
Pintus S, Akberdin I, Yevshin I, Makhnovskii P, Tyapkina O, Nigmetzyanov I, Nurullin L, Deviatiiarov R, Shagimardanova E, Popov D, Kolpakov F, Gusev O, Gazizova G |
| Citation(s) |
34203013 |
| Submission date |
Dec 11, 2019 |
| Last update date |
Sep 16, 2021 |
| Contact name |
Ruslan Deviatiiarov |
| E-mail(s) |
ruselusalbus@gmail.com
|
| Phone |
+79196948678
|
| Organization name |
Kazan Federal University
|
| Department |
Institute of Fundamental Medicine and Biology
|
| Lab |
Extreme Biology
|
| Street address |
Paris Commune, 9
|
| City |
Kazan |
| State/province |
Tatarstan |
| ZIP/Postal code |
420021 |
| Country |
Russia |
| |
|
| Platforms (1) |
| GPL18694 |
Illumina HiSeq 2500 (Rattus norvegicus) |
|
| Samples (42)
|
|
| Relations |
| BioProject |
PRJNA594929 |
| SRA |
SRP236604 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE141827_Level2_table.osc.txt.gz |
2.6 Mb |
(ftp)(http) |
TXT |
| GSE141827_RAW.tar |
418.7 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
|
|
|
|
 |
Less...
More...