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| Status |
Public on Aug 31, 2019 |
| Title |
Expression data from 2D and 3D HepG2 cells |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
Expression data from HepG2 cultured in 2D monolayer cultures and 3D Matrigel cultures
We performed this study to understand differences in gene expression profiles of 2D and 3D HepG2 cultures
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| Overall design |
RNA samples were collected from 2D monolayer cells cultured for 3 days and 3D HepG2 cultured for 3-,7-,14-,21- and 28-days
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| Contributor(s) |
Ramaiahgari SC, van de Water B |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Mar 24, 2019 |
| Last update date |
Sep 02, 2019 |
| Contact name |
Sreenivasa C Ramaiahgari |
| E-mail(s) |
ramaiahgari@protonmail.com
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| Organization name |
NIEHS
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| Department |
National Toxicology Program
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| Lab |
Biomolecular Screening Branch
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| Street address |
111 TW Alexander drive
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| City |
Durham |
| State/province |
NC |
| ZIP/Postal code |
27709 |
| Country |
USA |
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| Platforms (1) |
| GPL13158 |
[HT_HG-U133_Plus_PM] Affymetrix HT HG-U133+ PM Array Plate |
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| Samples (24)
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| GSM3684560 |
2D HepG2 day_3, replicate 4 |
| GSM3684561 |
3D HepG2 day_3, replicate 1 |
| GSM3684562 |
3D HepG2 day_3, replicate 2 |
| GSM3684563 |
3D HepG2 day_3, replicate 3 |
| GSM3684564 |
3D HepG2 day_3, replicate 4 |
| GSM3684565 |
3D HepG2 day_7, replicate 1 |
| GSM3684566 |
3D HepG2 day_7, replicate 2 |
| GSM3684567 |
3D HepG2 day_7, replicate 3 |
| GSM3684568 |
3D HepG2 day_7, replicate 4 |
| GSM3684569 |
3D HepG2 day_14, replicate 1 |
| GSM3684570 |
3D HepG2 day_14, replicate 2 |
| GSM3684571 |
3D HepG2 day_14, replicate 3 |
| GSM3684572 |
3D HepG2 day_14, replicate 4 |
| GSM3684573 |
3D HepG2 day_21, replicate 1 |
| GSM3684574 |
3D HepG2 day_21, replicate 2 |
| GSM3684575 |
3D HepG2 day_21, replicate 3 |
| GSM3684576 |
3D HepG2 day_21, replicate 4 |
| GSM3684577 |
3D HepG2 day_28, replicate 1 |
| GSM3684578 |
3D HepG2 day_28, replicate 2 |
| GSM3684579 |
3D HepG2 day_28, replicate 3 |
| GSM3684580 |
3D HepG2 day_28, replicate 4 |
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| Relations |
| BioProject |
PRJNA528808 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE128763_RAW.tar |
59.4 Mb |
(http)(custom) |
TAR (of CEL, CHP) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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