NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE124162 Query DataSets for GSE124162
Status Public on Jan 24, 2020
Title Interleukin-4 induces neural stem cell plasticity by antagonizing Serotonin/HTR1 signaling that suppresses BDNF/NGFRA in adult zebrafish Alzheimer's disease model
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary In Alzheimer’s disease (AD), reduced neural stem cell (NSC) plasticity causes reduced neurogenesis. Therefore, supplying the brain with new neurons using endogenous neurogenic reservoir – NSCs - might counteract the progression of AD. However, the mechanisms that enhance NSC plasticity are unknown. We recently generated an AD model in adult zebrafish brain where NSCs could react by enhanced plasticity and neurogenesis, and identified Interleukin-4 (IL4) as a key factor underlying this ability. Although IL4 directly regulated NSCs through its receptor IL4R, it was not clear how IL4R-negative NSCs would enhance their proliferation. Here, by performing whole tissue and single cell transcriptomics, we report that IL4 regulates IL4R-negative NSCs through modulating tryptophan metabolism by reducing the availability of Serotonin (5-HT) that suppresses NSC plasticity. 5-HT receptor htr1+ is only expressed in periventricular neurons where 5-HT balances the expression of brain-derived neurotrophic factor (bdnf), which promotes NSC proliferation through its receptor NGFRA, which is predominantly expressed in IL4R-negative NSCs. AD conditions induce IL4 that reduce 5-HT levels, and suppresses the suppressive effect on BDNF levels. Elevated levels of BDNF activate, through NGFRA, the proliferative output of the IL4R-negative NSCs. 5-HT overexpression dramatically reduces BDNF and proliferative ability of NSCs. Our results identify a novel IL4-dependent balancing mechanism on NSC proliferation by 5-HT through an intermediary regulatory cascade via HTR1, and BDNF/NGFRA signaling between periventricular neurons and NSCs. Our findings mark the heterogeneity of NSCs in response to direct or indirect regulation by IL4 – a biomarker for neurodegeneration-induced NSC plasticity.
 
Overall design 6 months old Tg(her4.1:EGFP) adult fish brains were injected with CPP or AB42 using CVMI method (Kizil etal, 2013). 48 hpi brains were dissected, dissocited and non-GFP (GFP-N) and GFP positive (GFP-P) cells were sorted with FACS. Following total RNA isolation, samples were sequenced with triple replicates on Illumina HiSeq 2000 platform (75 bp end-read).
 
Contributor(s) Bhattarai P, Cosacak MI, Kizil C
Citation(s) 31905199, 34685728, 35681503
Submission date Dec 20, 2018
Last update date Jun 24, 2022
Contact name Caghan Kizil
E-mail(s) ck2893@cumc.columbia.edu
Phone 4752570197
Organization name Columbia University Irving Medical Center
Street address 650 W 168th St.
City New York
State/province NY
ZIP/Postal code 10032
Country USA
 
Platforms (1)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
Samples (8)
GSM3523224 PBS injected GFP(-) 24 hpi rep1
GSM3523225 PBS injected GFP(-) 24 hpi rep2
GSM3523226 PBS injected GFP(+) 24 hpi rep1
Relations
BioProject PRJNA510925
SRA SRP174004

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE124162_lab955.GRCz10.e81.tab.gz 2.6 Mb (ftp)(http) TAB
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap