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Series GSE122044 Query DataSets for GSE122044
Status Public on Oct 29, 2019
Title MiR-29 Regulates de novo Lipogenesis in the Liver and Circulating Triglyceride Levels in a Sirt1-Dependent Manner
Organisms Macaca mulatta; Mus musculus; Rattus norvegicus
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary Systematic comparison of multiple models of diabetes / insulin resistance reveals miR-29 as a commonality among them, and further analysis reveals it as a key therapeutic target for insulin resistance.
 
Overall design Comparison of multiple models of diabetes at the small RNA-seq and RNA-seq level. Further sequencing analysis of miR-29 following perturbation using locked nucleic acids.
 
Contributor(s) Sethupathy P, Kanke M
Citation(s) 31251698
Submission date Oct 31, 2018
Last update date Oct 29, 2019
Contact name Praveen Sethupathy
Organization name Cornell University
Lab Dr. Sethupathy Lab
Street address Cornell University College of Veterinary Medicine, Box 17
City Ithica
State/province NY
ZIP/Postal code 14853
Country USA
 
Platforms (5)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (84)
GSM3453541 UCD-T2DM 2-week Rep #1_small RNA
GSM3453542 UCD-T2DM 2-week Rep #2_small RNA
GSM3453543 UCD-T2DM 2-week Rep #3_small RNA
Relations
BioProject PRJNA503253
SRA SRP167384

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE122044_ZF_RPMMM_all.csv.gz 45.8 Kb (ftp)(http) CSV
GSE122044_fishoil_RPMMM_all.csv.gz 33.5 Kb (ftp)(http) CSV
GSE122044_lna29_normalizedCounts.csv.gz 1.7 Mb (ftp)(http) CSV
GSE122044_obob_STZ_RPMMM_all.csv.gz 32.7 Kb (ftp)(http) CSV
GSE122044_ucdt2dm_RPMMM_all.csv.gz 28.4 Kb (ftp)(http) CSV
GSE122044_ucdt2dm_normalizedCounts.csv.gz 3.1 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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