 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Sep 01, 2008 |
| Title |
GATA4 conditional knockout in the small intestine |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by array
|
| Summary |
Background and Aims: Although the zinc finger transcription factor GATA4 has been implicated in regulating jejunal gene expression, the contribution of GATA4 in controlling jejunal physiology has not been addressed. Methods: We generated mice in which the Gata4 gene was specifically deleted in the small intestinal epithelium. Measurements of plasma cholesterol and phospholipids, intestinal absorption of dietary fat and cholesterol, and gene expression were performed on these animals. Results: Mice lacking GATA4 in the intestine displayed a dramatic block in their ability to absorb cholesterol and dietary fat. Comparison of the global gene expression profiles of control jejunum, control ileum, and GATA4 null jejunum by gene array analysis demonstrated that GATA4 null jejunum lost expression of 53% of the jejunal-specific gene set and gained expression of 47% of the set of genes unique to the ileum. These alterations in gene expression included a decrease in mRNAs encoding lipid and cholesterol transporters as well as an increase in mRNAs encoding proteins involved in bile acid absorption. Conclusion: Our data demonstrate that GATA4 is essential for jejunal function including fat and cholesterol absorption and confirm that GATA4 plays a pivotal role in determining jejunal versus ileal identity.
Keywords: genetic modification
|
| |
|
| Overall design |
Total RNA was harvested from the following sources and used to Affymetrix array analysis following manufacturer defined protocols:
control jejunum (Gata4loxP/+VilCre), 3 male mice, adult (6-8 wk)
mutant jejunum (Gata4loxP/-VilCre), 3 male mice, adult (6-8 wk)
control ileum (Gata4loxP/+VilCre), 3 male mice, adult (6-8 wk).
A total of nine Mouse Genome 430_2.0 arrays were hybridized for this study.
Jejunum was defined as 10 cm from the pyloric sphincter, and ileum was defined as 1 cm from the cecum. The animals used to harvest control jejunum and ileum were independent of each other.
|
| |
|
| Contributor(s) |
Battle MA, Bondow BJ, Iverson M, Adams SJ, Jandacek R, Tso P, Duncan SA |
| Citation(s) |
18812176 |
| Submission date |
Apr 16, 2008 |
| Last update date |
Feb 11, 2019 |
| Contact name |
Stephen A Duncan |
| E-mail(s) |
duncanst@musc.edu
|
| Phone |
843-792-9104
|
| Organization name |
Medical University South Carolina
|
| Department |
Regenerative Medicine and Cell Biology
|
| Lab |
Duncan Lab
|
| Street address |
173 Ashley Avenue, BSB 6th Floor, Room 657A
|
| City |
Charleston |
| State/province |
SC |
| ZIP/Postal code |
29425 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL1261 |
[Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array |
|
| Samples (9)
|
|
| Relations |
| BioProject |
PRJNA106785 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE11194_RAW.tar |
33.8 Mb |
(http)(custom) |
TAR (of CEL, CHP) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
|
|
|
|
 |
Less...
More...