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| Status |
Public on Nov 12, 2017 |
| Title |
Differential gene expression in the liver of zebrafish larvae exposed to 1 mM inorganic arsenic from 4-120 hpf |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
The goal of this study is to compare gene expression levels in the livers of larval Tg(fabp10:nls-mcherry) exposed to 1 mM inorganic arsenic from 4-120 hpf to the unexposed siblings. Samples were collected from Tg(fabp10:nls-mcherry) zebrafish larvae that were derived from incrossed parents of the same strain. The background of transgenic lines were typically from mixed outcrosses of the transgenics to AB, TAB5, and TAB14 strains when regenerating the lines as the working stocks aged. All samples were collected at approximately 120 hpf - natural spawning at 8:30-9:00AM EST on day zero, samples were collected at 8-10AM EST on day 5.
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| Overall design |
Zebrafish larvae that were untreated (control) or those exposed to 1 mM inorganic arsenic from 4-120 hpf were anesthetized and the liver was microdissected from 10-20 larvae and pooled per treatment group. The transgenic line Tg(fabp10:nls-mcherry) was used to facilitate microdissection of the liver. RNA was extracted using the Zymo Quick-RNA Micro Kit with on-column DNase treatment. Libraries were prepared according to Illumina Truseq RNA sample prep kit, version 2, followed by Ribo-Zero Gold treatment.
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| Contributor(s) |
Bambino K, Zhang C, Edepli KS |
| Citation(s) |
29361514 |
| Submission date |
Oct 13, 2017 |
| Last update date |
Nov 11, 2021 |
| Contact name |
Kirsten Sadler Edepli |
| E-mail(s) |
kirsten.edepli@nyu.edu
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| Phone |
971568327587
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| Organization name |
New York University Abu Dhabi
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| Department |
Biology
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| Street address |
PO Box 129188
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| City |
Abu Dhabi |
| State/province |
Abu Dhabi |
| ZIP/Postal code |
000 |
| Country |
United Arab Emirates |
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| Platforms (1) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA414225 |
| SRA |
SRP119921 |
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