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Platform GPL9526 Query DataSets for GPL9526
Status Public on Jan 11, 2010
Title Illumina MouseWG-6 v2.0 expression beadchip [Alternative CDF: affy4248alt]
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Mus musculus
Manufacturer Illumina Inc.
Manufacture protocol This is identical to GPL6887 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below.
 
 
Submission date Nov 03, 2009
Last update date Jan 11, 2010
Contact name Marni J Falk
E-mail(s) falkm@email.chop.edu
Phone 215-590-4564
Organization name CHOP
Department Pediatrics/ Human Genetics
Lab ARC 1002c
Street address 3615 Civic Center Blvd
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Samples (6) GSM467888, GSM467889, GSM467890, GSM467891, GSM467892, GSM467893
Series (1)
GSE18677 Cross-platform expression microarray performance in a mouse model of mitochondrial disease therapy
Relations
Alternative to GPL6887 (Alternative CDF [official])

Data table header descriptions
ID Remapped probe set defined by AffyProbeMiner
Official_Symbol Number of probes in each probe set
Number_probes Official gene symbol
Entrezgene_ID NCBI Entrez gene ID
SPOT_ID set of genes
ORF

Data table
ID Official_Symbol Number_probes Entrezgene_ID SPOT_ID ORF
AFFYCUSTOMHF1 Ntrk1 1 18211 Ntrk1
AFFYCUSTOMHF10 2010005H15Rik;EG408196;Stfa3 1 20863;408196;76770 2010005H15Rik;EG408196;Stfa3
AFFYCUSTOMHF100 Kif3b 1 16569 Kif3b
AFFYCUSTOMHF1000 Abcb10 1 56199 Abcb10
AFFYCUSTOMHF10000 LOC677108+671445:LOC671445+665914:EG665914 1 677108 LOC677108+671445:LOC671445+665914:EG665914
AFFYCUSTOMHF10001 Arhgef15 2 442801 Arhgef15
AFFYCUSTOMHF10002 Olfr308 1 258614 Olfr308
AFFYCUSTOMHF10003 Olfr1116;Olfr1118;Olfr1122 1 257875;259033;404328 Olfr1116;Olfr1118;Olfr1122
AFFYCUSTOMHF10004 2810455K09Rik;LOC670651 1 670651;72805 2810455K09Rik;LOC670651
AFFYCUSTOMHF10005 EG212727;EG245290;EG668346;LOC640796;LOC668359;LOC669476;LOC674115;Tdpoz1;Tdpoz3 1 207213;212727;245290;399674;640796;668346;668359;669476;674115 EG212727;EG245290;EG668346;LOC640796;LOC668359;LOC669476;LOC674115;Tdpoz1;Tdpoz3
AFFYCUSTOMHF10006 V1rh13;V1rh14 1 171272;171273 V1rh13;V1rh14
AFFYCUSTOMHF10007 Trim52 1 212085 Trim52
AFFYCUSTOMHF10008 Kcne3 1 57442 Kcne3
AFFYCUSTOMHF10009 Ms4a4b 1 60361 Ms4a4b
AFFYCUSTOMHF1001 EG668838+677336:LOC677336;LOC672896;Rap1a 1 109905;668838;672896 EG668838+677336:LOC677336;LOC672896;Rap1a
AFFYCUSTOMHF10010 Il6st 1 16195 Il6st
AFFYCUSTOMHF10011 V1rc21 1 171194 V1rc21
AFFYCUSTOMHF10012 LOC544977;LOC668799;LOC670633;LOC670945;LOC670950;LOC674452+668144:EG668144;LOC677290;Rps3a 1 20091;544977;668799;670633;670945;670950;674452;677290 LOC544977;LOC668799;LOC670633;LOC670945;LOC670950;LOC674452+668144:EG668144;LOC677290;Rps3a
AFFYCUSTOMHF10013 Htra2 2 64704 Htra2
AFFYCUSTOMHF10014 Zswim6 3 67263 Zswim6

Total number of rows: 23829

Table truncated, full table size 1222 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9526_affy4248alt.cdf.gz 773.2 Kb (ftp)(http) CDF

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