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Platform GPL72 Query DataSets for GPL72
Status Public on Mar 11, 2002
Title [DrosGenome1] Affymetrix Drosophila Genome Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Drosophila melanogaster
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

Has 14010 entries and was indexed 29-Jan-2002
The sequences used to develop this array are accessible through FlyBase. Probes were synthesized in situ.
Contains >13,500 gene sequences predicted from annotation of the Drosophila genome version 1, >8000 sequences for which confirming EST or full-length cDNA evidence is available, ~3,000 genes identified using prediction algorithms, and ~2,500 genes that not only have a gene predicted algorithmically, but also show some homology to genes from other organisms.
For ~4,000 genes, expressed sequence alignment information from the Drosophila Gene Collection was used to modify the boundaries of the predicted transcript. In these cases, the probe sets correspond to the modified exon boundaries. In addition, several hundred ESTs close to predicted gene sequences, but lying outside of predetermined gene inclusion boundaries, are included.

Keywords = high density oligonucleotide array
July 06, 2016: annotation table updated with netaffx build 35
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=fly
http://www.affymetrix.com/analysis/index.affx
Submission date Feb 19, 2002
Last update date Jul 06, 2016
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (1233) GSM2452, GSM2453, GSM2454, GSM2583, GSM2584, GSM2585 
Series (111)
GSE86 Comparison of Dorsal threshold outputs
GSE93 Wing imaginal disc spatial expression
GSE271 Drosophila Eye Development - Larval Stage

Data table header descriptions
ID Affymetrix Probe Set ID
CLONE_ID FlyBase Identifier
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID
FlyBase
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID CLONE_ID SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID FlyBase Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
141200_at FBgn0034594 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0034594 /sym=CG9418 /name= /prod= /func=DNA binding /map=57C3-57C3 /transc=CT26718 /len=1331 /GB:AE003453 /note=3prime sequence from clone BDGP:LD46483.3prime-hit FBgn0034594 CG9418 gene product from transcript CG9418-RA /// High mobility group protein 1/2 CG9418 /// Hmg-2 37407 NM_137709 FBgn0026582 0016568 // chromatin modification // inferred from sequence similarity 0005634 // nucleus // inferred from sequence similarity 0003677 // DNA binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation
141201_at FBgn0031611 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0031611 /sym=CG17840 /name= /prod= /func= /map=24F6-24F6 /transc=CT39638 /len=2699 /GB:AE003576 /note=3prime sequence from clone BDGP:LD46494.3prime-hit FBgn0031611 CG17840 gene product from transcript CG17840-RA CG17840 33658 NM_134997 FBgn0031611 0008152 // metabolic process // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation /// 0042578 // phosphoric ester hydrolase activity // inferred from electronic annotation
141202_at FBgn0022984 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0022984 /sym=qkr58E-3 /name=quaking related 58E-3 /prod= /func=RNA binding /map=58D7-58D8 /transc=CT12011 /len=1401 /GB:AE003457 /note=3prime sequence from clone BDGP:LD46502.3prime-hit FBgn0022984 quaking related 58E-3 qkr58E-3 37559 NM_001259531 /// NM_057958 FBgn0022984 0000381 // regulation of alternative mRNA splicing, via spliceosome // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from genetic interaction /// 0006915 // apoptotic process // inferred from mutant phenotype /// 0006915 // apoptotic process // inferred from physical interaction 0005634 // nucleus // inferred from direct assay /// 0016607 // nuclear speck // inferred from direct assay 0003723 // RNA binding // inferred from direct assay /// 0003723 // RNA binding // not recorded /// 0003729 // mRNA binding // non-traceable author statement
141203_at FBgn0029676 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0029676 /sym=CG2947 /name= /prod= /func=chaperone /map=3F6-3F6 /transc=CT9995 /len=1778 /GB:AE003429 /note=3prime sequence from clone BDGP:LD46530.3prime-hit FBgn0029676 Hsc/Hsp70-interacting protein /// Hsc/Hsp70-interacting protein related HIP /// HIP-R 31335 318211 NM_001014719 /// NM_130718 /// NM_166988 /// NM_166989 FBgn0029676 /// FBgn0260484 0070389 // chaperone cofactor-dependent protein refolding // inferred from sequence or structural similarity 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from electronic annotation /// 0030544 // Hsp70 protein binding // inferred from sequence or structural similarity /// 0031072 // heat shock protein binding // inferred from sequence or structural similarity /// 0051087 // chaperone binding // inferred from sequence or structural similarity
141204_at FBgn0032643 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0032643 /sym=CG6453 /name= /prod= /func=receptor /map=36C4-36C4 /transc=CT20120 /len=2012 /GB:AE003655 /note=3prime sequence from clone BDGP:LD46533.3prime-hit FBgn0032643 CG6453 gene product from transcript CG6453-RA CG6453 35056 NM_001259134 /// NM_136000 FBgn0032643 0006491 // N-glycan processing // inferred from electronic annotation /// 0008152 // metabolic process // inferred from electronic annotation /// 0046331 // lateral inhibition // inferred from mutant phenotype 0017177 // glucosidase II complex // inferred from sequence or structural similarity 0004558 // alpha-glucosidase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016798 // hydrolase activity, acting on glycosyl bonds // inferred from electronic annotation /// 0032450 // maltose alpha-glucosidase activity // inferred from electronic annotation
141205_at FBgn0036039 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0036039 /sym=CG18177 /name= /prod= /func= /map=67C1-67C1 /transc=CT41036 /len=2067 /GB:AE003551 /note=3prime sequence from clone BDGP:LD46538.3prime-hit FBgn0036039 N(alpha)-acetyltransferase 60 Naa60 39142 NM_001144457 /// NM_140096 /// NM_206310 FBgn0036039 0000090 // mitotic anaphase // inferred from mutant phenotype /// 0007059 // chromosome segregation // inferred from mutant phenotype /// 0016568 // chromatin modification // inferred from electronic annotation /// 0016573 // histone acetylation // inferred from electronic annotation /// 0017196 // N-terminal peptidyl-methionine acetylation // inferred from direct assay /// 0043967 // histone H4 acetylation // inferred from direct assay 0005737 // cytoplasm // inferred by curator 0004402 // histone acetyltransferase activity // inferred from electronic annotation /// 0004596 // peptide alpha-N-acetyltransferase activity // inferred from direct assay /// 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0010485 // H4 histone acetyltransferase activity // inferred from direct assay /// 0016740 // transferase activity // inferred from electronic annotation /// 0016746 // transferase activity, transferring acyl groups // inferred from electronic annotation
141206_at FBgn0025725 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0025725 /sym=alphaCop /name=alpha-coatomer protein /prod=coatomer alpha-subunit /func=enzyme /map=62A10-62A10 /transc=CT6199 /len=4043 /GB:AE003472 /note=3prime sequence from clone BDGP:LD46584.3prime-hit FBgn0025725 alpha-coatomer protein alphaCop 38199 NM_058047 /// NM_167908 FBgn0025725 0000902 // cell morphogenesis // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from sequence or structural similarity /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // non-traceable author statement /// 0006909 // phagocytosis // inferred from mutant phenotype /// 0006911 // phagocytosis, engulfment // inferred from mutant phenotype /// 0007112 // male meiosis cytokinesis // inferred from mutant phenotype /// 0010883 // regulation of lipid storage // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // non-traceable author statement /// 0048812 // neuron projection morphogenesis // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0019028 // viral capsid // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from direct assay /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0030126 // COPI vesicle coat // non-traceable author statement 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation
141207_at FBgn0030762 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0030762 /sym=CG4453 /name= /prod=nucleoporin /func=endopeptidase /map=14F2-14F2 /transc=CT14464 /len=7261 /GB:AE003502 /note=3prime sequence from clone BDGP:LD46585.3prime-hit FBgn0030762 Nucleoporin 153 Nup153 32630 NM_001103532 /// NM_001144734 /// NM_132908 FBgn0061200 0006338 // chromatin remodeling // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006606 // protein import into nucleus // inferred from mutant phenotype /// 0006607 // NLS-bearing protein import into nucleus // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006999 // nuclear pore organization // inferred from mutant phenotype /// 0007184 // SMAD protein import into nucleus // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0022008 // neurogenesis // inferred from mutant phenotype /// 0034401 // regulation of transcription by chromatin organization // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0051028 // mRNA transport // inferred from electronic annotation /// 0051298 // centrosome duplication // inferred from mutant phenotype 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005643 // nuclear pore // inferred from sequence or structural similarity /// 0005694 // chromosome // inferred from electronic annotation /// 0005719 // nuclear euchromatin // inferred from direct assay /// 0005813 // centrosome // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0031965 // nuclear membrane // inferred from electronic annotation /// 0034399 // nuclear periphery // inferred from direct assay /// 0044613 // nuclear pore central transport channel // inferred from mutant phenotype /// 0072686 // mitotic spindle // inferred from direct assay 0003677 // DNA binding // inferred from electronic annotation /// 0005487 // nucleocytoplasmic transporter activity // inferred from mutant phenotype /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0017056 // structural constituent of nuclear pore // inferred from mutant phenotype /// 0031490 // chromatin DNA binding // inferred from direct assay /// 0046872 // metal ion binding // inferred from electronic annotation
141208_at FBgn0015623 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0015623 /sym=Cpr /name=Cytochrome P45 reductase /prod=NADPH--ferrihemoprotein reductase /func=NADPH--ferrihemoprotein reductase ; EC:1.6.2.4 /map=26C3-26C4 /transc=CT26884 /len=2716 /GB:AE003613 /note=3prime sequence from clone BDGP:LD46590.3prime-hit FBgn0015623 Cytochrome P450 reductase Cpr 33883 NM_001273199 /// NM_001273200 /// NM_057810 /// NM_164689 FBgn0015623 0055114 // oxidation-reduction process // inferred from electronic annotation 0005783 // endoplasmic reticulum // non-traceable author statement /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct assay /// 0005829 // cytosol // not recorded /// 0016020 // membrane // inferred from electronic annotation 0003958 // NADPH-hemoprotein reductase activity // inferred from sequence or structural similarity /// 0003958 // NADPH-hemoprotein reductase activity // non-traceable author statement /// 0005506 // iron ion binding // inferred from electronic annotation /// 0010181 // FMN binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0016709 // oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen // not recorded
141209_at FBgn0030126 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0030126 /sym=CG12135 /name= /prod= /func= /map=8D10-8D10 /transc=CT7760 /len=1146 /GB:AE003446 /note=3prime sequence from clone BDGP:LD46621.3prime-hit FBgn0030126 CG12135 gene product from transcript CG12135-RA c12.1 53435 NM_144348 FBgn0040235 0000398 // mRNA splicing, via spliceosome // inferred by curator /// 0000398 // mRNA splicing, via spliceosome // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0007052 // mitotic spindle organization // inferred from mutant phenotype /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005681 // spliceosomal complex // inferred from electronic annotation /// 0071011 // precatalytic spliceosome // inferred from direct assay /// 0071013 // catalytic step 2 spliceosome // inferred from direct assay 0003723 // RNA binding // inferred from sequence or structural similarity
141210_at FBgn0037490 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0037490 /sym=CG10053 /name= /prod= /func= /map=84C7-84C7 /transc=CT28289 /len=867 /GB:AE003672 /note=3prime sequence from clone BDGP:LD46678.3prime-hit FBgn0037490 CG10053 gene product from transcript CG10053-RA CG10053 40871 NM_141454 FBgn0037490 0003676 // nucleic acid binding // inferred from electronic annotation
141211_at FBgn0035876 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0035876 /sym=CG7081 /name= /prod=peroxisomal membrane protein /func=chaperone /map=66C8-66C8 /transc=CT21881 /len=1022 /GB:AE003555 /note=3prime sequence from clone BDGP:LD46714.3prime-hit FBgn0035876 Peroxin 2 Pex2 38941 NM_139953 FBgn0035876 0000209 // protein polyubiquitination // inferred from sequence similarity /// 0007031 // peroxisome organization // inferred from mutant phenotype /// 0007031 // peroxisome organization // inferred from sequence or structural similarity /// 0007112 // male meiosis cytokinesis // inferred from mutant phenotype /// 0007285 // primary spermatocyte growth // inferred from mutant phenotype /// 0007286 // spermatid development // inferred from mutant phenotype /// 0016558 // protein import into peroxisome matrix // inferred from mutant phenotype /// 0048137 // spermatocyte division // inferred from mutant phenotype 0005622 // intracellular // inferred from mutant phenotype /// 0005777 // peroxisome // inferred from sequence or structural similarity /// 0005778 // peroxisomal membrane // inferred from sequence or structural similarity 0004842 // ubiquitin-protein transferase activity // inferred from sequence similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
141212_at FBgn0027360 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0027360 /sym=Tim10 /name= /prod=mitochondrial preprotein translocase, subunit 10 /func= /map=57F8-57F8 /transc=CT27866 /len=639 /GB:AE003455 /note=3prime sequence from clone BDGP:LD46744.3prime-hit FBgn0027360 CG42497 gene product from transcript CG42497-RA /// Translocase of inner membrane 10 CG42497 /// Tim10 37478 8674071 NM_001169771 /// NM_137762 /// NM_166474 FBgn0027360 /// FBgn0260223 0006626 // protein targeting to mitochondrion // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0015031 // protein transport // non-traceable author statement /// 0045039 // protein import into mitochondrial inner membrane // inferred from electronic annotation /// 0045824 // negative regulation of innate immune response // inferred from mutant phenotype /// 0050829 // defense response to Gram-negative bacterium // inferred from mutant phenotype 0005739 // mitochondrion // inferred from electronic annotation /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005744 // mitochondrial inner membrane presequence translocase complex // inferred from sequence or structural similarity /// 0005744 // mitochondrial inner membrane presequence translocase complex // non-traceable author statement /// 0016020 // membrane // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from electronic annotation /// 0042719 // mitochondrial intermembrane space protein transporter complex // inferred from sequence or structural similarity 0008565 // protein transporter activity // inferred from sequence or structural similarity /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // inferred from sequence or structural similarity /// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity // non-traceable author statement /// 0046872 // metal ion binding // inferred from electronic annotation
141213_at FBgn0033728 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0033728 /sym=CG8505 /name= /prod=cuticle protein-like /func=structural protein /map=49A3-49A3 /transc=CT24871 /len=969 /GB:AE003822 /note=3prime sequence from clone BDGP:LD46766.3prime-hit FBgn0033728 Cuticular protein 49Ae Cpr49Ae 36351 NM_136930 FBgn0033728 0040003 // chitin-based cuticle development // not recorded 0031012 // extracellular matrix // not recorded 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010 // structural constituent of chitin-based larval cuticle // not recorded /// 0042302 // structural constituent of cuticle // inferred from electronic annotation
141214_at FBgn0004868 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0004868 /sym=Gdi /name=GDP dissociation inhibitor /prod=GDP-dissociation inhibitor /func=GDP-dissociation inhibitor /map=30B8-30B9 /transc=CT14400 /len=1589 /GB:AE003625 /note=3prime sequence from clone BDGP:LD46767.3prime-hit FBgn0004868 GDP dissociation inhibitor Gdi 34264 NM_001259024 /// NM_078800 FBgn0004868 0007269 // neurotransmitter secretion // non-traceable author statement /// 0015031 // protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // non-traceable author statement /// 0050790 // regulation of catalytic activity // inferred from direct assay /// 0050790 // regulation of catalytic activity // inferred from electronic annotation 0005875 // microtubule associated complex // inferred from direct assay /// 0008021 // synaptic vesicle // non-traceable author statement 0005092 // GDP-dissociation inhibitor activity // inferred from direct assay /// 0005092 // GDP-dissociation inhibitor activity // inferred from sequence or structural similarity /// 0005092 // GDP-dissociation inhibitor activity // non-traceable author statement /// 0005093 // Rab GDP-dissociation inhibitor activity // inferred from electronic annotation
141215_at FBgn0038313 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0038313 /sym=CG4338 /name= /prod= /func= /map=88E9-88E9 /transc=CT14192 /len=939 /GB:AE003708 /note=3prime sequence from clone BDGP:LD46811.3prime-hit FBgn0038313 CG4338 gene product from transcript CG4338-RA CG4338 41849 NM_142184 FBgn0038313 0006364 // rRNA processing // inferred from electronic annotation /// 0042254 // ribosome biogenesis // inferred from electronic annotation
141216_at FBgn0030457 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0030457 /sym=CG12096 /name= /prod= /func= /map=11D8-11D8 /transc=CT5973 /len=1535 /GB:AE003491 /note=3prime sequence from clone BDGP:LD46817.3prime-hit FBgn0030457 CG12096 gene product from transcript CG12096-RA CG12096 32269 NM_132634 FBgn0030457 0006457 // protein folding // inferred from electronic annotation /// 0006974 // cellular response to DNA damage stimulus // inferred from mutant phenotype 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0044183 // protein binding involved in protein folding // inferred from electronic annotation
141217_at FBgn0028833 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0028833 /sym=Dak1 /name= /prod= /func=enzyme /map=96F12-96F12 /transc=CT19154 /len=1070 /GB:AE003754 /note=3prime sequence from clone BDGP:LD46840.3prime-hit FBgn0028833 CG6092 gene product from transcript CG6092-RA Dak1 43165 NM_143199 FBgn0028833 0006139 // nucleobase-containing compound metabolic process // inferred from electronic annotation /// 0006221 // pyrimidine nucleotide biosynthetic process // inferred from electronic annotation /// 0006260 // DNA replication // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0046939 // nucleotide phosphorylation // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation 0004127 // cytidylate kinase activity // inferred from direct assay /// 0004127 // cytidylate kinase activity // inferred from sequence or structural similarity /// 0004127 // cytidylate kinase activity // non-traceable author statement /// 0005524 // ATP binding // inferred from electronic annotation /// 0009041 // uridylate kinase activity // inferred from direct assay /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016776 // phosphotransferase activity, phosphate group as acceptor // inferred from electronic annotation /// 0019201 // nucleotide kinase activity // inferred from electronic annotation /// 0019205 // nucleobase-containing compound kinase activity // inferred from electronic annotation
141218_at FBgn0004838 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0004838 /sym=Hrb27C /name=Heterogeneous nuclear ribonucleoprotein at 27C /prod= /func=RNA binding /map=27C4-27C4 /transc=CT29146 /len=2187 /GB:AE003615 /note=3prime sequence from clone BDGP:LD46853.3prime-hit FBgn0004838 Heterogeneous nuclear ribonucleoprotein at 27C Hrb27C 33968 NM_001169426 /// NM_001169427 /// NM_001258988 /// NM_001258989 /// NM_001258990 /// NM_057521 /// NM_164720 /// NM_164721 FBgn0004838 0006397 // mRNA processing // inferred from sequence or structural similarity /// 0007298 // border follicle cell migration // inferred from mutant phenotype /// 0007317 // regulation of pole plasm oskar mRNA localization // inferred from mutant phenotype /// 0007319 // negative regulation of oskar mRNA translation // traceable author statement /// 0007411 // axon guidance // inferred from mutant phenotype /// 0045451 // pole plasm oskar mRNA localization // inferred from mutant phenotype /// 0045727 // positive regulation of translation // inferred from direct assay /// 0046331 // lateral inhibition // inferred from mutant phenotype /// 0048024 // regulation of mRNA splicing, via spliceosome // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from direct assay /// 0005730 // nucleolus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0019013 // viral nucleocapsid // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from direct assay /// 0030529 // ribonucleoprotein complex // inferred from physical interaction /// 0030529 // ribonucleoprotein complex // inferred from sequence or structural similarity /// 0030529 // ribonucleoprotein complex // non-traceable author statement /// 0043186 // P granule // inferred from physical interaction /// 0043234 // protein complex // inferred from physical interaction 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003697 // single-stranded DNA binding // inferred from direct assay /// 0003723 // RNA binding // inferred from electronic annotation /// 0003729 // mRNA binding // inferred from sequence or structural similarity /// 0003729 // mRNA binding // non-traceable author statement /// 0003730 // mRNA 3'-UTR binding // inferred from direct assay /// 0003730 // mRNA 3'-UTR binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0048027 // mRNA 5'-UTR binding // non-traceable author statement /// 0048027 // mRNA 5'-UTR binding // traceable author statement
141219_at FBgn0032517 Drosophila melanogaster Oct 6, 2014 Exemplar sequence Flybase FB:FBgn0032517 /sym=CG7099 /name= /prod= /func= /map=34B6-34B6 /transc=CT21462 /len=5958 /GB:AE003640 /note=3prime sequence from clone BDGP:LD46862.3prime-hit FBgn0032517 CG7099 gene product from transcript CG7099-RA CG7099 34753 NM_135804 FBgn0032517

Total number of rows: 14010

Table truncated, full table size 14170 Kbytes.






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