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Status
Public on Jan 25, 2008
Title
Hofmann A. burtoni 16K brain_pinky_array_print4
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Haplochromis burtoni Manufacturer
Hofmann
Manufacture protocol
This array is built primarily from two Cichlid cDNA libraries. Library 1: Brain2000 was made in the lab of Russ Fernald using brains from all sexes, stages, and phenotypes. Library 2: Pinky2003 was made by Walter Salzburger using mixed tissues including gonads, liver, skin, muschle from all stages. this library was normalized Both libraries represent Astatotilapia burtoni Colony picking, PCR amplification, and array printing have been done at Harvard's Bauer Center for Genomics Research in the lab of Hans Hofmann. the array also includes candidate genes cloned in the Hofmann and Fernald labs as well as yeast control genes and a few other positive and negative controls
Support
glass
Coating
polysine
Description
synonym: Astatotilapia burtoni
Contributor(s)
Renn SC , Hofmann HA , Salzburger W Submission date
Jan 24, 2008
Last update date
Jul 02, 2009
Contact name
Suzy C.P. Renn
E-mail(s)
renns@reed.edu Phone
503 517 7967
Organization name
Reed College
Department
Biology
Street address
3203 SE Woodstock Blvd
City
Portland
State/province
OR
ZIP/Postal code
97202
Country
USA
Samples (164)
GSM424617 , GSM480806 , GSM480807 , GSM480808 , GSM480809 , GSM480810
GSM480811 ,
GSM480812 ,
GSM480813 ,
GSM569290 ,
GSM569291 ,
GSM569292 ,
GSM569293 ,
GSM569294 ,
GSM569295 ,
GSM569296 ,
GSM569297 ,
GSM569298 ,
GSM569299 ,
GSM569300 ,
GSM569301 ,
GSM569302 ,
GSM569303 ,
GSM569304 ,
GSM569305 ,
GSM569306 ,
GSM569307 ,
GSM569308 ,
GSM569309 ,
GSM645301 ,
GSM645302 ,
GSM645303 ,
GSM645304 ,
GSM645305 ,
GSM645306 ,
GSM706203 ,
GSM706204 ,
GSM706205 ,
GSM706206 ,
GSM706207 ,
GSM706208 ,
GSM706209 ,
GSM706210 ,
GSM706211 ,
GSM706212 ,
GSM706213 ,
GSM706214 ,
GSM706215 ,
GSM706216 ,
GSM706217 ,
GSM706218 ,
GSM706219 ,
GSM706220 ,
GSM706221 ,
GSM706222 ,
GSM706223 ,
GSM706224 ,
GSM706225 ,
GSM706226 ,
GSM706227 ,
GSM706228 ,
GSM706229 ,
GSM706230 ,
GSM706231 ,
GSM706232 ,
GSM706233 ,
GSM706234 ,
GSM1315983 ,
GSM1315984 ,
GSM1315985 ,
GSM1315986 ,
GSM1315987 ,
GSM1315988 ,
GSM1315989 ,
GSM1315990 ,
GSM1315991 ,
GSM1315992 ,
GSM1315993 ,
GSM1315994 ,
GSM1315995 ,
GSM1315996 ,
GSM1315997 ,
GSM1315998 ,
GSM1315999 ,
GSM1316000 ,
GSM1316001 ,
GSM1316002 ,
GSM1316003 ,
GSM1316004 ,
GSM1316005 ,
GSM1316006 ,
GSM1316007 ,
GSM1316008 ,
GSM1316009 ,
GSM1316010 ,
GSM1316011 ,
GSM1316012 ,
GSM1316013 ,
GSM1316014 ,
GSM1316015 ,
GSM1316016 ,
GSM1316017 ,
GSM1316018 ,
GSM1316019 ,
GSM1316020 ,
GSM1316021 ,
GSM1316022 ,
GSM1316023 ,
GSM1316024 ,
GSM1316025 ,
GSM2551260 ,
GSM2551261 ,
GSM2551262 ,
GSM2551263 ,
GSM2551264 ,
GSM2551265 ,
GSM2551266 ,
GSM2551267 ,
GSM2551268 ,
GSM2551269 ,
GSM2551270 ,
GSM2551271 ,
GSM2551272 ,
GSM2551273 ,
GSM2551274 ,
GSM2551275 ,
GSM2551276 ,
GSM2551277 ,
GSM2551278 ,
GSM2551279 ,
GSM2551280 ,
GSM2551281 ,
GSM2551282 ,
GSM2551283 ,
GSM2551284 ,
GSM2551285 ,
GSM2551286 ,
GSM2551287 ,
GSM2551288 ,
GSM2551289 ,
GSM2551290 ,
GSM2551291 ,
GSM2551292 ,
GSM2551293 ,
GSM2551294 ,
GSM2551295 ,
GSM2551296 ,
GSM2551297 ,
GSM2551298 ,
GSM2551299 ,
GSM2551300 ,
GSM2551301 ,
GSM2551302 ,
GSM2551303 ,
GSM2551304 ,
GSM2551305 ,
GSM2551306 ,
GSM2551307 ,
GSM2551308 ,
GSM2551309 ,
GSM2551310 ,
GSM2551311 ,
GSM2551312 ,
GSM2551313 Series (7)
GSE16939 Paralog Specificity in cDNA Microarray Experiments
GSE19368 Malawi Duplication 20091207
GSE23094 Julidochromis species male vs. female 20100721
GSE26277 Extraction of Total RNA from Single Neurons: Mauthner-cell Cytoplasm vs. Whole Brain
GSE28508 Estrogen receptor regulation of the social transcriptome
GSE54468 Social odors conveying dominance and reproductive information induce rapid physiological and neuromolecular changes in a cichlid fish.
GSE97082 Ectodini cichlid brain comparison of mating type
Data table header descriptions ID in house clone ID traceable to 384 well plate
Array_Location Block_Column_Row_ for print 4.03 - 4.10
GB_ACC GenBank accession when quality sequence is available
TC-2006 T.I.G.R. assigned tentative contig number build-2006
spot_type indicates if spot is from a library (includes candidate clone) or is a control feature NO EMPTY FEATURES OFR
GLP928_spot SPOT_ID
Data table ID Array_Location GB_ACC TC-2006 spot_type GLP928_spot SPOT_ID hh_Ab_Pinky2003_000010102
1_1_1_print4_2006
DY626896 TC1086
library
hh_Ab_Pinky2003_000010108
1_1_2_print4_2006
DY626902 TC552
library
hh_Ab_Pinky2003_000010126
1_1_3_print4_2006
DY626918 library
hh_Ab_Pinky2003_000010132
1_1_4_print4_2006
DY626924 library
hh_Ab_Pinky2003_000010150
1_1_5_print4_2006
DY626941 library
hh_Ab_Pinky2003_000010156
1_1_6_print4_2006
DY626947 TC450
library
hh_Ab_Pinky2003_000010174
1_1_7_print4_2006
DY626963 library
hh_Ab_Pinky2003_000010180
1_1_8_print4_2006
DY626969 library
hh_Ab_Pinky2003_000010486
1_1_9_print4_2006
DY631338 library
hh_Ab_Pinky2003_000010492
1_1_10_print4_2006
DY631344 TC494
library
hh_Ab_Pinky2003_000010510
1_1_11_print4_2006
DY631359 library
hh_Ab_Pinky2003_000010516
1_1_12_print4_2006
DY631365 TC801
library
hh_Ab_Pinky2003_000010534
1_1_13_print4_2006
DY631378 library
hh_Ab_Pinky2003_000010540
1_1_14_print4_2006
DY631383 TC1243
library
hh_Ab_Pinky2003_000010558
1_1_15_print4_2006
DY631398 TC978
library
hh_Ab_Pinky2003_000010564
1_1_16_print4_2006
DY631404 library
hh_Ab_Pinky2003_000010870
1_1_17_print4_2006
DY631604 TC515
library
hh_Ab_Pinky2003_000010876
1_1_18_print4_2006
library
--unknown clone
hh_Ab_Pinky2003_000010894
1_1_19_print4_2006
DY631625 library
hh_Ab_Pinky2003_000010900
1_1_20_print4_2006
DY631631 TC1622
library
16970 1246 Kbytes .Supplementary data files not provided
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