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Status
Public on Oct 26, 2003
Title
Amersham Biosciences CodeLink Uniset Rat I Bioarray
Technology type
spotted oligonucleotide
Distribution
custom-commercial
Organism
Rattus norvegicus
Description
Amersham Biosciences CodeLink Uniset Rat I Bioarray.
It has:
- ~10 000 rat genes, one specific, prescreened 30-mer probe per gene, functionally validated - one set of housekeeping genes that may be used for baseline normalization - 68 bacterial control probes, 18 positive control probes to monitor cDNA and cRNA synthesis and array activity, - 50 negative control probes to determine threshold and assess background
Web link
http://www.siu.edu/~pbgc/
Contributor(s)
Iqbal MJ , Jones KL
Submission date
Jul 24, 2003
Last update date
Jun 16, 2005
Contact name
M. Javed Iqbal
E-mail(s)
mjiqbal@siu.edu
Phone
618-453-3121
Fax
618-453-5727
URL
http://www.siu.edu/~pbgc
Organization name
Southern Illinois University at Carbondale
Department
Animal Sci, Food & Nutrition + Plant, Soil & General Agriculture
Lab
Soybean Genomics
Street address
176 Ag. Building, MC 4415
City
Carbondale
State/province
IL
ZIP/Postal code
62901
Country
USA
Samples (9)
GSM8662 , GSM8663 , GSM8664 , GSM8665 , GSM8666 , GSM8667
Series (1)
GSE566
Endophyte-infected diet alters gene expression in heifer luteal tissue
Data table header descriptions
ID
GB_ACC
GenBank Accession numbers
Probe_Name
Oligonucleotide Probe name
Type
Type of probe. Discovery - Genes of interest for particular species; Positive - Probes to bacterial transcripts that are spiked into total RNA; Negative - Probes to bacterial transcripts that are not spiked into the total RNA and are used for negative control threshold calculation; Other - Probes to bacterial transcripts that are neither part of the negative control threshold calculation nor the positive controls; Fiducials - Controls that the software package uses to grid the array.
Description
Gene/oligo description
SPOT_ID
Data table
ID
GB_ACC
Probe_Name
Type
Description
SPOT_ID
1
AA799301
AA799301_PROBE1
DISCOVERY
EST188798 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA19 3' END SIMILAR TO LIGATIN, MRNA SEQUENCE.
2
AA799313
AA799313_PROBE1
DISCOVERY
EST188810 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA25 3' END, MRNA SEQUENCE.
3
AA799329
AA799329_PROBE1
DISCOVERY
EST188826 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA34 5' END, MRNA SEQUENCE.
4
AA799331
AA799331_PROBE1
DISCOVERY
EST188828 RATTUS NORVEGICUS CDNA, 5' END
5
AA799347
AA799347_PROBE1
DISCOVERY
EST188844 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA46 3' END, MRNA SEQUENCE.
6
AA799358
AA799358_PROBE1
DISCOVERY
EST188855 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA53 3' END, MRNA SEQUENCE.
7
AA799400
AA799400_PROBE1
DISCOVERY
EST188897 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAA76 3' END, MRNA SEQUENCE.
8
AA799428
AA799428_PROBE1
DISCOVERY
EST188925 RATTUS NORVEGICUS CDNA, 5' END
9
AA799450
AA799450_PROBE1
DISCOVERY
EST188947 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB20 3' END, MRNA SEQUENCE.
10
AA799470
AA799470_PROBE1
DISCOVERY
EST188967 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB41 3' END, MRNA SEQUENCE.
11
AA799471
AA799471_PROBE1
DISCOVERY
EST188968 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB42 3' END, MRNA SEQUENCE.
12
AA799476
AA799476_PROBE1
DISCOVERY
EST188973 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB47 3' END, MRNA SEQUENCE.
13
AA799487
AA799487_PROBE1
DISCOVERY
EST188984 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB63 3' END, MRNA SEQUENCE.
14
AA799499
AA799499_PROBE1
DISCOVERY
EST188996 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB77 3' END, MRNA SEQUENCE.
15
AA799503
AA799503_PROBE1
DISCOVERY
EST189000 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB81 3' END, MRNA SEQUENCE.
16
AA799507
AA799507_PROBE1
DISCOVERY
EST189004 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAB87 3' END, MRNA SEQUENCE.
17
AA799515
AA799515_PROBE1
DISCOVERY
EST189012 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAC03 3' END, MRNA SEQUENCE.
18
AA799526
AA799526_PROBE1
DISCOVERY
EST189023 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAC15 3' END, MRNA SEQUENCE.
19
AA799532
AA799532_PROBE1
DISCOVERY
EST189029 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAC23 3' END, MRNA SEQUENCE.
20
AA799544
AA799544_PROBE1
DISCOVERY
EST189041 NORMALIZED RAT HEART, BENTO SOARES RATTUS SP. CDNA CLONE RHEAC36 3' END, MRNA SEQUENCE.
Total number of rows: 10399 Table truncated, full table size 1260 Kbytes .
Supplementary data files not provided