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Platform GPL3021

Query DataSets for GPL3021

Status

Public on Dec 09, 2005

Title

ISU Maize 12k cDNA Generation II Version B-IG

Technology type

spotted DNA/cDNA

Distribution

non-commercial

Organism

Zea mays

Manufacturer

Schnable Laboratory at Iowa State University(ISU)

Manufacture protocol

The ISU microarray facility have generated a maize gene chip that contains 12,160 spotted cDNA inserts. These cDNA clones were obtained from NSF Plant Genome EST projects led by Ginny Walbot and Pat Schnable.

Contributor(s)

Schnable PS

Submission date

Oct 26, 2005

Last update date

May 01, 2006

Contact name

Patrick S. Schnable

E-mail(s)

schnable@iastate.edu

Phone

515-294-0975

Organization name

Iowa State University

Street address

2035B Roy J Carver Co-Lab

City

Ames

State/province

ZIP/Postal code

50011

Country

USA

Samples (144)

More...

GSM66053, GSM67527, GSM67528, GSM75616, GSM75617, GSM75618

Series (1)

GSE3017

Global gene expression profiling of developing maize anthers

Data table header descriptions
ID
meta_row	The number of rows of subgrids
meta_column	The number of columns of subgrids
row	The number of rows of spots contained within the grid
column	The number of columns of spots contained within the grid
ref	Plate source refer information of spots
GB_ACC	GeneBank Accession Number of spots
GB_LIST	List of GenBank Accession Numbers if a spot is associated with more than one number
SPOT_ID	Identify the feature of spots without GB_ACC
SPOT_INFO	Specifies spot category - Maize Gene, Maize Control Gene, Exogenous, Human Control Gene, No Sequence (Sequence not obtained while resequencing the spot), Unspecified (Suspected cross contamination), Empty (The original source plate well was empty or added to chip to fill the matrix), BadPCR (Anything that didn't have one distinct band, e.g. no band, multiple bands, smears) and Unknown (No GB_ACC or Clone ID or No ID given)

Data table
ID	meta_row	meta_column	row	column	ref	GB_ACC	GB_LIST	SPOT_ID	SPOT_INFO
1	1	1	1	1	stan2027h-i-13-NoSeq(AI782943)			No Sequence	No Sequence
2	1	1	1	2	stan2027h-a-13-DV491105	DV491105			Maize Gene
3	1	1	1	3	stan2027h-i-9-DV490256	DV490256			Maize Gene
4	1	1	1	4	stan2027h-a-9-DV489539	DV489539			Maize Gene
5	1	1	1	5	stan2027h-i-5-DV491396	DV491396			Maize Gene
6	1	1	1	6	stan2027h-a-5-DV490281	DV490281			Maize Gene
7	1	1	1	7	stan2027h-i-1-DV490929	DV490929			Maize Gene
8	1	1	1	8	stan2027h-a-1-NoSeq(AI782984)			No Sequence	No Sequence
9	1	1	1	9	stan2124h-i-21-NoSeq(AW000326)			No Sequence	No Sequence
10	1	1	1	10	stan2124h-a-21-NoSeq(AI783310)			No Sequence	No Sequence
11	1	1	1	11	stan2124h-i-17-unspecified(AW000273)			Unspecified	Unspecified
12	1	1	1	12	stan2124h-a-17-unspecified(AI783316)			Unspecified	Unspecified
13	1	1	1	13	stan2124h-i-13-DV490140	DV490140			Maize Gene
14	1	1	1	14	stan2124h-a-13-DV490898	DV490898			Maize Gene
15	1	1	1	15	stan2124h-i-9-DV489724	DV489724			Maize Gene
16	1	1	1	16	stan2124h-a-9-DV490800	DV490800			Maize Gene
17	1	1	1	17	stan2124h-i-5-DV490226	DV490226			Maize Gene
18	1	1	1	18	stan2124h-a-5-DV491504	DV491504			Maize Gene
19	1	1	1	19	stan2124h-i-1-DV491770	DV491770			Maize Gene
20	1	1	1	20	stan2124h-a-1-DV491730	DV491730			Maize Gene

Total number of rows: 12160

Table truncated, full table size 774 Kbytes.

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