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| Status |
Public on Feb 19, 2021 |
| Title |
Agilent-079364 GeoChip 5.0M (180K) |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
uncultured soil microorganism |
| Manufacturer |
Agilent microarray |
| Manufacture protocol |
https://www.ou.edu/ieg/tools/protocols
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| Description |
Bacteria; Archaea; Eukaryota; Viruses
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| Submission date |
Feb 18, 2021 |
| Last update date |
Mar 15, 2021 |
| Contact name |
Shu-Kuan Wong |
| E-mail(s) |
wong.shu.kuan@nipr.ac.jp
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| Organization name |
National Polar Research Institute
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| Street address |
10-3, Midori-cho,
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| City |
Tachikawa-shi, |
| State/province |
Tokyo |
| ZIP/Postal code |
190-8518 |
| Country |
Japan |
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| Samples (150)
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GSM5151406, GSM5151407, GSM5151408, GSM5151409, GSM5151410, GSM5151411
GSM5151412, GSM5151413, GSM5151414, GSM5151415, GSM5172220, GSM5172221, GSM5172222, GSM5172223, GSM5172224, GSM5172225, GSM5172226, GSM5172227, GSM5172228, GSM5172229, GSM5173461, GSM5173462, GSM5173463, GSM5173464, GSM5173465, GSM5173466, GSM5173467, GSM5173468, GSM5173469, GSM5173470, GSM5243709, GSM5243710, GSM5243711, GSM5243712, GSM5243713, GSM5243714, GSM5243715, GSM5243716, GSM5243717, GSM5243718, GSM5243719, GSM5243720, GSM5243721, GSM5243722, GSM5243723, GSM5243724, GSM5243725, GSM5243726, GSM5243727, GSM5243728, GSM5243729, GSM5243730, GSM5243731, GSM5243732, GSM5243733, GSM5243734, GSM5243735, GSM5243736, GSM5243737, GSM5243738, GSM5243739, GSM5243740, GSM5243741, GSM5243742, GSM5243743, GSM5243744, GSM5243745, GSM5243746, GSM5243747, GSM5243748, GSM5243749, GSM5243750, GSM5243751, GSM5243752, GSM5243753, GSM5243754, GSM5243755, GSM5243756, GSM5243757, GSM5243758, GSM5243759, GSM5243760, GSM5243761, GSM5243762, GSM5243763, GSM5243764, GSM5243765, GSM5243766, GSM5243767, GSM5243768, GSM5243769, GSM5243770, GSM5243771, GSM5243772, GSM5243773, GSM5243774, GSM5243775, GSM5243776, GSM5243777, GSM5243778, GSM5243779, GSM5243780, GSM5243781, GSM5243782, GSM5243783, GSM5243784, GSM5243785, GSM5243786, GSM5243787, GSM5243788, GSM5243789, GSM5243790, GSM5243791, GSM5243792, GSM5243793, GSM5243794, GSM5243795, GSM5243796, GSM5243797, GSM5243798, GSM5243799, GSM5243800, GSM5243801, GSM5243802, GSM5243803, GSM5243804, GSM5243805, GSM5243806, GSM5243807, GSM5243808, GSM5243809, GSM5243810, GSM5243811, GSM5243812, GSM5243813, GSM5243814, GSM5243815, GSM5243816, GSM5243817, GSM5243818, GSM5243819, GSM5243820, GSM5243821, GSM5243822, GSM5243823, GSM5243824, GSM5243825, GSM5243826, GSM5243827, GSM5243828
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| Series (4)
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| GSE168623 |
Survey of Functional Genes in the Arctic Soil |
| GSE168911 |
Survey of Functional Genes in the Arctic Soil of Whapmagoostui-Kuujjuarapik |
| GSE168985 |
Survey of Functional Genes in the Arctic Soil of Pond Inlet |
| GSE172195 |
Geochip data of soil microbial community of biomes from three termperature zones |
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| Data table header descriptions |
| ID |
|
| SPOT_ID |
Protein ID |
| GENE |
The abbreviation of gene detected |
| SPECIES |
The organism the gene derives from |
| LINEAGE |
The phylogenetic information of organism |
| ANNOTATION |
The full name of gene detected |
| GENECATEGORY |
The categories according to gene functions |
| SUBCATEGORY1 |
Coarse division of gene categories |
| SUBCATEGORY2 |
Fine division of gene categories |
| SPOT_ID |
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| Data table |
| ID |
SPOT_ID |
GENE |
SPECIES |
LINEAGE |
ANNOTATION |
GENECATEGORY |
SUBCATEGORY1 |
SUBCATEGORY2 |
SPOT_ID |
| 55418027 |
55418027 |
B_lactamase |
Plasmid pB3 |
NA |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 242129292 |
242129292 |
B_lactamase |
uncultured bacterium AOCefta1 |
superkingdom:Bacteria; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 406990631 |
406990631 |
B_lactamase |
uncultured bacterium |
superkingdom:Bacteria; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 197296831a |
197296831 |
B_lactamase |
uncultured bacterium BLR13 |
superkingdom:Bacteria; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
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| 197296840 |
197296840 |
B_lactamase |
uncultured bacterium BLR10 |
superkingdom:Bacteria; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 197296836 |
197296836 |
B_lactamase |
uncultured bacterium BLR18 |
superkingdom:Bacteria; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 242129287 |
242129287 |
B_lactamase |
uncultured bacterium AOCarb2 |
superkingdom:Bacteria; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 387855060 |
387855060 |
B_lactamase |
Emticicia oligotrophica DSM 17448 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 387854945 |
387854945 |
B_lactamase |
Emticicia oligotrophica DSM 17448 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Emticicia;species:Emticicia oligotrophica; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 387847234 |
387847234 |
B_lactamase |
Fibrisoma limi BUZ 3 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Fibrisoma;species:Fibrisoma limi; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 124003215 |
124003215 |
B_lactamase |
Microscilla marina ATCC 23134 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Cytophagia;order:Cytophagales;family:Cytophagaceae;genus:Microscilla;species:Microscilla marina; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 159876678 |
159876678 |
B_lactamase |
Flavobacteriales bacterium ALC-1 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 386820160 |
386820160 |
B_lactamase |
Joostella marina DSM 19592 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Joostella;species:Joostella marina; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 325336899 |
325336899 |
B_lactamase |
Riemerella anatipestifer RA-GD |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Riemerella;species:Riemerella anatipestifer; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 294980602 |
294980602 |
B_lactamase |
Zunongwangia profunda SM-A87 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Flavobacteriia;order:Flavobacteriales;family:Flavobacteriaceae;genus:Zunongwangia;species:Zunongwangia profunda; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 332332507 |
332332507 |
B_lactamase |
Haliscomenobacter hydrossis DSM 1100 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Haliscomenobacter;species:Haliscomenobacter hydrossis; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 378574097 |
378574097 |
B_lactamase |
Saprospira grandis str. Lewin |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Saprospiraceae;genus:Saprospira;species:Saprospira grandis; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 373957902 |
373957902 |
B_lactamase |
Mucilaginibacter paludis DSM 18603 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Mucilaginibacter;species:Mucilaginibacter paludis; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 326800198 |
326800198 |
B_lactamase |
Sphingobacterium sp. 21 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
| 227537055 |
227537055 |
B_lactamase |
Sphingobacterium spiritivorum ATCC 33300 |
superkingdom:Bacteria;phylum:Bacteroidetes;class:Sphingobacteriia;order:Sphingobacteriales;family:Sphingobacteriaceae;genus:Sphingobacterium;species:Sphingobacterium spiritivorum; |
Beta-lactamase |
Microbial Defense |
Antibiotic resistance |
Degradation |
|
Total number of rows: 161961
Table truncated, full table size 42942 Kbytes.
| Supplementary data files not provided |
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