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Platform GPL19918 Query DataSets for GPL19918
Status Public on Mar 21, 2015
Title [HG-U133_Plus_2] Affymetrix Human Genome U133 Plus 2.0 Array [Gene-level, 10K]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site

Complete coverage of the Human Genome U133 Set plus 6,500 additional genes for analysis of over 47,000 transcripts
All probe sets represented on the GeneChip Human Genome U133 Set are identically replicated on the GeneChip Human Genome U133 Plus 2.0 Array. The sequences from which these probe sets were derived were selected from GenBank®, dbEST, and RefSeq. The sequence clusters were created from the UniGene database (Build 133, April 20, 2001) and then refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the University of California, Santa Cruz Golden-Path human genome database (April 2001 release).
In addition, there are 9,921 new probe sets representing approximately 6,500 new genes. These gene sequences were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from the UniGene database (Build 159, January 25, 2003) and refined by analysis and comparison with a number of other publicly available databases, including the Washington University EST trace repository and the NCBI human genome assembly (Build 31).

 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 06, 2012: annotation table updated with netaffx build 32
 
Submission date Mar 20, 2015
Last update date Mar 21, 2015
Contact name Sven Lindner
E-mail(s) sven.lindner@rub.de
Organization name University Hospital Essen
Street address Hufelandstraße 55
City Essen
ZIP/Postal code 45147
Country Germany
 
Samples (6) GSM1638828, GSM1638829, GSM1638830, GSM1638831, GSM1638832, GSM1638833
Series (1)
GSE67102 Expression data of human neuroblastoma SK-N-AS treated with the PLK1 inhibitor GSK461364
Relations
Alternative to GPL570 (official)

Data table header descriptions
ID
SPOT_ID Gene symbol

Data table
ID SPOT_ID
RFC2 RFC2
THRA THRA
ESRRA ESRRA
SCARB1 SCARB1
TTLL12 TTLL12
MAPK1 MAPK1
SPATA17 SPATA17
MSANTD3 MSANTD3
AFG3L1P AFG3L1P
PIGX PIGX
ALG10 ALG10
TTC39C TTC39C
C15orf40 C15orf40
MFAP3 MFAP3
EYA3 EYA3
RBBP6 RBBP6
CENPBD1 CENPBD1
TRIOBP TRIOBP
PDE7A PDE7A
CNOT7 CNOT7

Total number of rows: 10177

Table truncated, full table size 129 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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