|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Apr 10, 2013 |
Title |
[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [CDF: GATExplorer_Ensembl v57] |
Technology type |
in situ oligonucleotide |
Distribution |
custom-commercial |
Organism |
Homo sapiens |
Manufacturer |
Affymetrix |
Manufacture protocol |
See manufacturer's web site
|
|
|
Description |
The probes were mapped to GENE LOCi by the CDF built by GATExplorer http://bioinfow.dep.usal.es/xgate/principal.php http://bioinfow.dep.usal.es/xgate/mapping/mapping.php
The CDF file is designed to install as 'R' package; 'genemapperhumangene1.0cdf_3.0.tar.gz' available at: http://bioinfow.dep.usal.es/xgate/mapping/mapping.php?content=rprogram
|
|
|
Submission date |
Apr 09, 2013 |
Last update date |
Apr 10, 2013 |
Contact name |
Javier De Las Rivas |
E-mail(s) |
jrivas@usal.es
|
Phone |
34 923 294819
|
Organization name |
Cancer Research Center (CiC-IBMCC)
|
Department |
CSIC and University of Salamanca
|
Lab |
Bioinformatics and Functional Genomics
|
Street address |
Campus Miguel de Unamuno
|
City |
Salamanca |
ZIP/Postal code |
37001 |
Country |
Spain |
|
|
Samples (61)
|
GSM1119367, GSM1119368, GSM1119369, GSM1119370, GSM1365853, GSM1365854
GSM1365855, GSM1365856, GSM1365857, GSM1365858, GSM1372005, GSM1372006, GSM1372007, GSM1372008, GSM1372009, GSM1372010, GSM1372011, GSM1372012, GSM1372013, GSM1372014, GSM1372015, GSM1372016, GSM2068775, GSM2068776, GSM2068777, GSM2068778, GSM2068779, GSM2068780, GSM2068781, GSM2068782, GSM2068783, GSM2069578, GSM2069579, GSM2069580, GSM2069581, GSM2069582, GSM2069583, GSM2341131, GSM2341132, GSM2341133, GSM2341134, GSM2341135, GSM2341136, GSM2341137, GSM2341138, GSM2341139, GSM2341140, GSM2341141, GSM2341142, GSM2341143, GSM2341144, GSM2341145, GSM2341146, GSM2341147, GSM2341148, GSM2341149, GSM2341150, GSM2341151, GSM2341152, GSM2341153, GSM2341154
|
Series (6)
|
GSE45904 |
Human cystatin D (CST5) locates in the nucleus at sites of active transcription and regulates gene expression |
GSE56615 |
Expression data from human breast cancer cells MDA-MB-231-Luc knockdown for RRAS2 expression. |
GSE56941 |
SPROUTY2 target genes in human colon carcinoma cells |
GSE78174 |
Matrix metalloproteinase-9 in chronic lymphocytic leukemia |
GSE78207 |
Regulation of gene expression in chronic lymphocytic leukemia cells in response to arsenic trioxide. |
GSE87806 |
Gene expression profiles of human Mesenchymal Stromal Cells (MSC) from JAK2+ myeloproliferative neoplasms (MPN) |
|
Relations |
Alternative to |
GPL6244 (Alternative CDF [official]) |
Data table header descriptions |
ID |
Ensembl_ID |
ORF |
Gene symbol |
biotype |
|
chromosome |
|
band |
|
start_position |
|
end_position |
|
gene_description |
|
SPOT_ID |
Ensembl Gene Id |
Data table |
ID |
ORF |
biotype |
chromosome |
band |
start_position |
end_position |
gene_description |
SPOT_ID |
ENSG00000000003 |
TSPAN6 |
protein_coding |
X |
q22.1 |
99883667 |
99894988 |
tetraspanin 6 [Source:HGNC Symbol;Acc:11858] |
ENSG00000000003 |
ENSG00000000005 |
TNMD |
protein_coding |
X |
q22.1 |
99839799 |
99854882 |
tenomodulin [Source:HGNC Symbol;Acc:17757] |
ENSG00000000005 |
ENSG00000000419 |
DPM1 |
protein_coding |
20 |
q13.13 |
49551404 |
49575092 |
dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit [Source:HGNC Symbol;Acc:3005] |
ENSG00000000419 |
ENSG00000000457 |
SCYL3 |
protein_coding |
1 |
q24.2 |
169821804 |
169863408 |
SCY1-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:19285] |
ENSG00000000457 |
ENSG00000000460 |
C1orf112 |
protein_coding |
1 |
q24.2 |
169631245 |
169823221 |
Uncharacterized protein C1orf112 [Source:UniProtKB/Swiss-Prot;Acc:Q9NSG2] |
ENSG00000000460 |
ENSG00000000938 |
FGR |
protein_coding |
1 |
p36.11 |
27938575 |
27961788 |
Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog [Source:HGNC Symbol;Acc:3697] |
ENSG00000000938 |
ENSG00000000971 |
CFH |
protein_coding |
1 |
q31.3 |
196621008 |
196716634 |
complement factor H [Source:HGNC Symbol;Acc:4883] |
ENSG00000000971 |
ENSG00000001036 |
FUCA2 |
protein_coding |
6 |
q24.2 |
143815949 |
143832837 |
fucosidase, alpha-L- 2, plasma [Source:HGNC Symbol;Acc:4008] |
ENSG00000001036 |
ENSG00000001084 |
GCLC |
protein_coding |
6 |
p12.1 |
53362139 |
53409831 |
glutamate-cysteine ligase, catalytic subunit [Source:HGNC Symbol;Acc:4311] |
ENSG00000001084 |
ENSG00000001167 |
NFYA |
protein_coding |
6 |
p21.1 |
41040684 |
41067715 |
nuclear transcription factor Y, alpha [Source:HGNC Symbol;Acc:7804] |
ENSG00000001167 |
ENSG00000001460 |
C1orf201 |
protein_coding |
1 |
p36.11 |
24683489 |
24743424 |
UPF0490 protein C1orf201 [Source:UniProtKB/Swiss-Prot;Acc:Q5TH74] |
ENSG00000001460 |
ENSG00000001461 |
NIPAL3 |
protein_coding |
1 |
p36.11 |
24742284 |
24799466 |
NIPA-like domain containing 3 [Source:HGNC Symbol;Acc:25233] |
ENSG00000001461 |
ENSG00000001497 |
LAS1L |
protein_coding |
X |
q12 |
64732462 |
64754667 |
LAS1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:25726] |
ENSG00000001497 |
ENSG00000001561 |
ENPP4 |
protein_coding |
6 |
p21.1 |
46097701 |
46114435 |
ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) [Source:HGNC Symbol;Acc:3359] |
ENSG00000001561 |
ENSG00000001617 |
SEMA3F |
protein_coding |
3 |
p21.31 |
50192478 |
50226508 |
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:10728] |
ENSG00000001617 |
ENSG00000001626 |
CFTR |
protein_coding |
7 |
q31.2 |
117119358 |
117308719 |
cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) [Source:HGNC Symbol;Acc:1884] |
ENSG00000001626 |
ENSG00000001629 |
ANKIB1 |
protein_coding |
7 |
q21.2 |
91875548 |
92030698 |
ankyrin repeat and IBR domain containing 1 [Source:HGNC Symbol;Acc:22215] |
ENSG00000001629 |
ENSG00000001630 |
CYP51A1 |
protein_coding |
7 |
q21.2 |
91741465 |
91808825 |
cytochrome P450, family 51, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:2649] |
ENSG00000001630 |
ENSG00000001631 |
KRIT1 |
protein_coding |
7 |
q21.2 |
91828283 |
91875480 |
KRIT1, ankyrin repeat containing [Source:HGNC Symbol;Acc:1573] |
ENSG00000001631 |
ENSG00000002016 |
RAD52 |
protein_coding |
12 |
p13.33 |
1021243 |
1058888 |
RAD52 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:9824] |
ENSG00000002016 |
Total number of rows: 24916
Table truncated, full table size 3410 Kbytes.
Supplementary data files not provided |
|
|
|
|
|