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Platform GPL16987 Query DataSets for GPL16987
Status Public on Apr 10, 2013
Title [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [CDF: GATExplorer_Ensembl v57]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description The probes were mapped to GENE LOCi by the CDF built by GATExplorer
http://bioinfow.dep.usal.es/xgate/principal.php
http://bioinfow.dep.usal.es/xgate/mapping/mapping.php

The CDF file is designed to install as 'R' package;
'genemapperhumangene1.0cdf_3.0.tar.gz' available at:
http://bioinfow.dep.usal.es/xgate/mapping/mapping.php?content=rprogram
 
Submission date Apr 09, 2013
Last update date Apr 10, 2013
Contact name Javier De Las Rivas
E-mail(s) jrivas@usal.es
Phone 34 923 294819
Organization name Cancer Research Center (CiC-IBMCC)
Department CSIC and University of Salamanca
Lab Bioinformatics and Functional Genomics
Street address Campus Miguel de Unamuno
City Salamanca
ZIP/Postal code 37001
Country Spain
 
Samples (61) GSM1119367, GSM1119368, GSM1119369, GSM1119370, GSM1365853, GSM1365854 
Series (6)
GSE45904 Human cystatin D (CST5) locates in the nucleus at sites of active transcription and regulates gene expression
GSE56615 Expression data from human breast cancer cells MDA-MB-231-Luc knockdown for RRAS2 expression.
GSE56941 SPROUTY2 target genes in human colon carcinoma cells
Relations
Alternative to GPL6244 (Alternative CDF [official])

Data table header descriptions
ID Ensembl_ID
ORF Gene symbol
biotype
chromosome
band
start_position
end_position
gene_description
SPOT_ID Ensembl Gene Id

Data table
ID ORF biotype chromosome band start_position end_position gene_description SPOT_ID
ENSG00000000003 TSPAN6 protein_coding X q22.1 99883667 99894988 tetraspanin 6 [Source:HGNC Symbol;Acc:11858] ENSG00000000003
ENSG00000000005 TNMD protein_coding X q22.1 99839799 99854882 tenomodulin [Source:HGNC Symbol;Acc:17757] ENSG00000000005
ENSG00000000419 DPM1 protein_coding 20 q13.13 49551404 49575092 dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit [Source:HGNC Symbol;Acc:3005] ENSG00000000419
ENSG00000000457 SCYL3 protein_coding 1 q24.2 169821804 169863408 SCY1-like 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:19285] ENSG00000000457
ENSG00000000460 C1orf112 protein_coding 1 q24.2 169631245 169823221 Uncharacterized protein C1orf112 [Source:UniProtKB/Swiss-Prot;Acc:Q9NSG2] ENSG00000000460
ENSG00000000938 FGR protein_coding 1 p36.11 27938575 27961788 Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog [Source:HGNC Symbol;Acc:3697] ENSG00000000938
ENSG00000000971 CFH protein_coding 1 q31.3 196621008 196716634 complement factor H [Source:HGNC Symbol;Acc:4883] ENSG00000000971
ENSG00000001036 FUCA2 protein_coding 6 q24.2 143815949 143832837 fucosidase, alpha-L- 2, plasma [Source:HGNC Symbol;Acc:4008] ENSG00000001036
ENSG00000001084 GCLC protein_coding 6 p12.1 53362139 53409831 glutamate-cysteine ligase, catalytic subunit [Source:HGNC Symbol;Acc:4311] ENSG00000001084
ENSG00000001167 NFYA protein_coding 6 p21.1 41040684 41067715 nuclear transcription factor Y, alpha [Source:HGNC Symbol;Acc:7804] ENSG00000001167
ENSG00000001460 C1orf201 protein_coding 1 p36.11 24683489 24743424 UPF0490 protein C1orf201 [Source:UniProtKB/Swiss-Prot;Acc:Q5TH74] ENSG00000001460
ENSG00000001461 NIPAL3 protein_coding 1 p36.11 24742284 24799466 NIPA-like domain containing 3 [Source:HGNC Symbol;Acc:25233] ENSG00000001461
ENSG00000001497 LAS1L protein_coding X q12 64732462 64754667 LAS1-like (S. cerevisiae) [Source:HGNC Symbol;Acc:25726] ENSG00000001497
ENSG00000001561 ENPP4 protein_coding 6 p21.1 46097701 46114435 ectonucleotide pyrophosphatase/phosphodiesterase 4 (putative function) [Source:HGNC Symbol;Acc:3359] ENSG00000001561
ENSG00000001617 SEMA3F protein_coding 3 p21.31 50192478 50226508 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:10728] ENSG00000001617
ENSG00000001626 CFTR protein_coding 7 q31.2 117119358 117308719 cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) [Source:HGNC Symbol;Acc:1884] ENSG00000001626
ENSG00000001629 ANKIB1 protein_coding 7 q21.2 91875548 92030698 ankyrin repeat and IBR domain containing 1 [Source:HGNC Symbol;Acc:22215] ENSG00000001629
ENSG00000001630 CYP51A1 protein_coding 7 q21.2 91741465 91808825 cytochrome P450, family 51, subfamily A, polypeptide 1 [Source:HGNC Symbol;Acc:2649] ENSG00000001630
ENSG00000001631 KRIT1 protein_coding 7 q21.2 91828283 91875480 KRIT1, ankyrin repeat containing [Source:HGNC Symbol;Acc:1573] ENSG00000001631
ENSG00000002016 RAD52 protein_coding 12 p13.33 1021243 1058888 RAD52 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:9824] ENSG00000002016

Total number of rows: 24916

Table truncated, full table size 3410 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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