NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL16353 Query DataSets for GPL16353
Status Public on Jun 08, 2013
Title NimbleGen Human DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Array (100718_HG18_CpG_Refseq_Prom_MeDIP)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site www.nimblegen.com
 
Description Human Genome HG18
CpG Islands + RefSeq promoters
 
Submission date Dec 04, 2012
Last update date Jun 08, 2013
Contact name Charles Warden
E-mail(s) cwarden@coh.org
Organization name City of Hope
Street address 1500 East Duarte Rd
City Duarte
State/province CA
ZIP/Postal code 91010
Country USA
 
Samples (16) GSM1048944, GSM1832760, GSM1832761, GSM1832762, GSM1832763, GSM1832764 
Series (4)
GSE42310 COHCAP: City of Hope CpG Island Analysis Pipeline
GSE42734 COHCAP MIRA / 450k Comparison [MIRA]
GSE71339 Epigenetic Alterations in Dense Human Spermatozoa for Assisted Reproduction

Data table header descriptions
ID
SEQ_ID
PROBE_ID
CHROMOSOME Chromosomal location
RANGE_GB CHROMOSOME GenBank accession.version
RANGE_START Chromosomal start position of oligo
RANGE_END Chromosomal end position of oligo
SPOT_ID
SEQUENCE

Data table
ID SEQ_ID PROBE_ID CHROMOSOME RANGE_GB RANGE_START RANGE_END SPOT_ID SEQUENCE
1 chr10:100017387-100020437 CHR10FS100017403 chr10 NC_000010.9 100017403 100017452 TTGAAGTCTTCTGCCCCCTTCCCTTCGGTGTTTCTGTCACACGCCGACCC
2 chr10:100017387-100020437 CHR10FS100017493 chr10 NC_000010.9 100017493 100017542 AGATCAGCCCTGGTTCGTTGTCCCCCAAGTCGTAAGTGTGACATCTGAAC
3 chr10:100017387-100020437 CHR10FS100017587 chr10 NC_000010.9 100017587 100017636 AATGGTTACACACGGCGTGTACACAAACAAGACACGCAGGCACCCCTGAG
4 chr10:100017387-100020437 CHR10FS100017687 chr10 NC_000010.9 100017687 100017736 TCACTTGTCCAGTTGGAAGCAGGTTGGTGAGCGACTGGAGGGCCGGGCTG
5 chr10:100017387-100020437 CHR10FS100017807 chr10 NC_000010.9 100017807 100017856 GAGAGACAGAAGGACAGATGGGACAGCAAGAGGCAGACCAAGAGGCAGAC
6 chr10:100017387-100020437 CHR10FS100017895 chr10 NC_000010.9 100017895 100017944 AGTCCGGGGCTGGGCGGGCGCCGCGGCGGAGCAGCGCTAACGGGCTCCCT
7 chr10:100017387-100020437 CHR10FS100018001 chr10 NC_000010.9 100018001 100018050 AGCTGGCCGCGGAGGAGGCCCCGCAGGCCCCGCCCCGGGCGGGCCTGGAG
8 chr10:100017387-100020437 CHR10FS100018089 chr10 NC_000010.9 100018089 100018138 CCGTCGGGACACAGGCCAGGTGGCGGGGGCGCCCAGCCGCAGCCGGCGGG
9 chr10:100017387-100020437 CHR10FS100018192 chr10 NC_000010.9 100018192 100018241 GAGCGGAGCTCTCGGGAAAGGGCGGCGCTGGGCCCGCGGCTGTTTTGCAG
10 chr10:100017387-100020437 CHR10FS100018288 chr10 NC_000010.9 100018288 100018337 CTTTTGCAGAACAAGGTAATGACGCCCACCTAGAGTCCCAGTCTGTGAGT
11 chr10:100017387-100020437 CHR10FS100018406 chr10 NC_000010.9 100018406 100018455 AATCTCACGAGCTCGGTCACTTAGGACAATGTAGACGCCCTTTCTGGGAG
12 chr10:100017387-100020437 CHR10FS100018500 chr10 NC_000010.9 100018500 100018549 TGCTCTCCTGCAGGAACAGGCGAGTCACCCAGAGTTTACTGAATACCGCC
13 chr10:100017387-100020437 CHR10FS100018610 chr10 NC_000010.9 100018610 100018659 ACTGAGCCCCAGGCGACATAACTTGCTCCTCCAGGCAATACACAGTGAAT
14 chr10:100017387-100020437 CHR10FS100018712 chr10 NC_000010.9 100018712 100018761 CACGGGAGGAGGGTGTTAGTGCAGGGAGCAGGGACTGTAGAATTAAAGAA
15 chr10:100017387-100020437 CHR10FS100018788 chr10 NC_000010.9 100018788 100018837 TCCCATCAGCTGAACTGAGCACCTAGGTGCCTGAACCCCAGTCCAAGCCC
16 chr10:100017387-100020437 CHR10FS100018892 chr10 NC_000010.9 100018892 100018941 TAAAATGGGCAGAGGGTTCCAGCCTCCCGGTTTCCTCCCTAGGCCCACAG
17 chr10:100017387-100020437 CHR10FS100019003 chr10 NC_000010.9 100019003 100019052 TCATCCCACAAGCCTTTATTGATTTTCTCCTACATGCTAGACAGGGTGCT
18 chr10:100017387-100020437 CHR10FS100019111 chr10 NC_000010.9 100019111 100019160 TAAGAATAAGCCTGGACAGGCAGAGTGTGATAGAGCTAGGATGTCAAGAT
19 chr10:100017387-100020437 CHR10FS100019187 chr10 NC_000010.9 100019187 100019236 CAGGTCTTAATGACCCTGCTGCCAGGGACCTGCCATCCACTCCTGGCTGC
20 chr10:100017387-100020437 CHR10FS100019299 chr10 NC_000010.9 100019299 100019348 ATGATGAATCAGCAGGAAAGAATGCTCCCAGCCTCGGGTCAGTGGCAGCA

Total number of rows: 711794

Table truncated, full table size 95835 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL16353_100718_HG18_CpG_Refseq_Prom_MeDIP.gff.gz 2.3 Mb (ftp)(http) GFF
GPL16353_100718_HG18_CpG_Refseq_Prom_MeDIP.ndf.gz 46.7 Mb (ftp)(http) NDF
GPL16353_100718_HG18_CpG_Refseq_Prom_MeDIP.pos.gz 6.5 Mb (ftp)(http) POS
GPL16353_100718_HG18_CpG_Refseq_Prom_MeDIP_HX3.ncd.gz 283 b (ftp)(http) NCD
GPL16353_100718_HG18_CpG_Refseq_Prom_MeDIP_probe_locations.gff.gz 4.9 Mb (ftp)(http) GFF

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap