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Status
Public on Oct 27, 2004
Title
NCI/LMT Mm_FCRF_CGEN oligo
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Mus musculus
Description
Printing by the NCI-Frederick/LMT Microarray Research Facilityhttp://www.corning.com )http://www.genomicsolutions.com ) that is fitted with a printhead containing 32 SMP3 printing pins from Telechem International (http://www.arrayit.com ). The mouse microarray (Mm_FCRF_CGEN oligo) probe set is based on 22,271 65mer oligonucleotides from Compugen Mouse Genome Oligo Set V1.0 (http://www.labonweb.com ). The set includes 17,815 Unique UniGene Clusters that mapped into build #120. Oligonucleotide probes are distributed into 384-well polypropylene plates (Genetix, 384 micro array) and dissolved in 3XSSC print buffer at a normalized 25 micromolar concentration. The Mm_FCRF_CGEN oligo microarray spot densities are 165 microns (center-to-center) and one spot is printed per probe per slide. The microarrays are printed on Corning CMT-GAPS II slides (Item #40004) coated with amino-silane and post-processed according to the manufacturer's protocol.
Submission date
Oct 25, 2004
Last update date
Jan 17, 2013
Contact name
Lisa M Gangi
E-mail(s)
gangil@pop.nci.nih.gov Phone
301-846-6296
Fax
301-846-6100
Organization name
NCI
Department
LMT-Frederick
Lab
Microarray Research Facility
Street address
915 Tollhouse Ave
City
Frederick
State/province
MD
ZIP/Postal code
21701
Country
USA
Samples (96)
GSM43965 , GSM43966 , GSM49518 , GSM100050 , GSM100051 , GSM100052
GSM100053 ,
GSM100054 ,
GSM100055 ,
GSM100056 ,
GSM100057 ,
GSM100058 ,
GSM100059 ,
GSM100060 ,
GSM100061 ,
GSM100062 ,
GSM100063 ,
GSM100064 ,
GSM100065 ,
GSM100066 ,
GSM100067 ,
GSM100068 ,
GSM100069 ,
GSM100070 ,
GSM100071 ,
GSM100072 ,
GSM100073 ,
GSM100074 ,
GSM100075 ,
GSM100076 ,
GSM100077 ,
GSM100078 ,
GSM100079 ,
GSM100080 ,
GSM100081 ,
GSM100082 ,
GSM100083 ,
GSM100084 ,
GSM100085 ,
GSM100086 ,
GSM100087 ,
GSM100088 ,
GSM100089 ,
GSM100090 ,
GSM100091 ,
GSM100092 ,
GSM100093 ,
GSM100094 ,
GSM100095 ,
GSM100096 ,
GSM100097 ,
GSM100098 ,
GSM100099 ,
GSM100100 ,
GSM100101 ,
GSM100102 ,
GSM100103 ,
GSM100104 ,
GSM100105 ,
GSM100106 ,
GSM100107 ,
GSM100108 ,
GSM100109 ,
GSM130212 ,
GSM130213 ,
GSM130214 ,
GSM130216 ,
GSM130217 ,
GSM130218 ,
GSM130219 ,
GSM130220 ,
GSM130221 ,
GSM130222 ,
GSM130223 ,
GSM130224 ,
GSM130225 ,
GSM130226 ,
GSM130227 ,
GSM130228 ,
GSM130229 ,
GSM130230 ,
GSM130231 ,
GSM130232 ,
GSM130233 ,
GSM130234 ,
GSM130235 ,
GSM130236 ,
GSM130237 ,
GSM130238 ,
GSM130239 ,
GSM130240 ,
GSM130241 ,
GSM130242 ,
GSM130243 ,
GSM130244 ,
GSM137324 Series (5)
GSE2348 Pmel CD8+ stim 1 vs. stim 2
GSE2578 Murine CD8+ Pmel Lymphocytes IL-2 vs. IL-15
GSE4451 Met Expression Signature in Hepatocytes
GSE5576 Low Risk and High Risk Mouse Skin Carcinogenesis
GSE5907 IRF2 regulates macrophages apoptosis through a STAT1/3 and Caspase-1-dependent mechanism
Data table header descriptions ID NIH mAdb well id plus replicate number
MADB_WELL_ID NIH mAdb plate-well identifier for oligo sample
Oligo_ID Oligo identifier
GENE Gene Name
UNIGENE UniGene Identifier Build; Mm.141
DESCRIPTION Gene Description
GB_ACC Representative GENBANK ID
SPOT_ID
Data table ID MADB_WELL_ID Oligo_ID GENE UNIGENE DESCRIPTION GB_ACC SPOT_ID 1226826_1
1226826
CGEN_MOUSE_EXT_3113995_1
M.musculus (12901a) HNF-3beta gene., gene
X76685 1226546_1
1226546
CGEN_MOUSE_EXT_3113927_1
Kirrel3
220710
Kin of IRRE like 3 (Drosophila)
AK019905 1226642_1
1226642
CGEN_MOUSE_EXT_3113951_1
2810055G20Rik
235604
RIKEN cDNA D130020G16 gene
AK021336 1226738_1
1226738
CGEN_MOUSE_EXT_3113975_1
Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930572P05, full insert sequence.
AK016285 1226834_1
1226834
CGEN_MOUSE_EXT_3113999_1
Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930478M09, full insert sequence.
AK015588 1226554_1
1226554
CGEN_MOUSE_EXT_3113931_1
St6gal1
149029
Beta galactoside alpha 2,6 sialyltransferase 1
AK014756 1226650_1
1226650
CGEN_MOUSE_EXT_3113955_1
1810019P04Rik
234876
RIKEN cDNA 1810019P04 gene (1810019P04Rik), mRNA.
NM_026111 1226746_1
1226746
CGEN_MOUSE_EXT_3113979_1
4933405E24Rik
56332
RIKEN cDNA 4933405E24 gene
AK016664 1226842_1
1226842
CGEN_MOUSE_EXT_3114003_1
Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930535E02, full insert sequence.
AK015977 1226922_1
1226922
CGEN_MOUSE_EXT_3114307_1
3110001H15Rik
228263
RIKEN cDNA 3110001H15 gene (3110001H15Rik), mRNA.
AK013946 1227018_1
1227018
CGEN_MOUSE_EXT_3114331_1
4930484I04Rik
261396
RIKEN cDNA 4930484I04 gene
AK015622 1227114_1
1227114
CGEN_MOUSE_EXT_3114355_1
1700030A11Rik
47109
RIKEN cDNA 1700030A11 gene
AK006520 1227210_1
1227210
CGEN_MOUSE_EXT_3114379_1
4930401A09Rik
48812
PREDICTED: Mus musculus RIKEN cDNA 4930401A09 gene (4930401A09Rik), mRNA.
AK015027 1226930_1
1226930
CGEN_MOUSE_EXT_3114311_1
Rragd
34108
Ras-related GTP binding D (Rragd), mRNA.
AK017818 1227026_1
1227026
CGEN_MOUSE_EXT_3114335_1
4930572O13Rik
109191
RIKEN cDNA 4930572O13 gene
AK016284 1227122_1
1227122
CGEN_MOUSE_EXT_3114359_1
5930409G06Rik
125475
RIKEN cDNA 5930409G06 gene
AK020028 1227218_1
1227218
CGEN_MOUSE_EXT_3114383_1
Epb4.1l3
131135
RIKEN cDNA 2410021H03 gene
AK010563 1226938_1
1226938
CGEN_MOUSE_EXT_3114315_1
Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:1700112H04, full insert sequence.
AK018956 1227034_1
1227034
CGEN_MOUSE_EXT_3114339_1
1700012D14Rik
323315
RIKEN cDNA 1700012D14 gene
AK005898 1227130_1
1227130
CGEN_MOUSE_EXT_3114363_1
5830411J07Rik
358764
RIKEN cDNA 5830411J07 gene (5830411J07Rik), mRNA.
NM_029082
22272 2517 Kbytes .Supplementary data files not provided
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