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Status
Public on Sep 14, 2004
Title
ABI Human Genome Survey Microarray Version 1
Technology type
spotted oligonucleotide
Distribution
commercial
Organism
Homo sapiens Manufacturer
Applied Biosystems
Manufacture protocol
see manufacturer's web site
Description
The Applied Biosystems Human Genome Survey Microarray--a component of the Applied Biosystems Gene Expression Array System--contains over 33,000 unique probes representing a complete, annotated, and fully curated set of approximately 27,850 human genes and approximately 53,000 transcripts from the public and Celera databases as of February, 2004.http://faqs.appliedbiosystems.com/cgi-bin/appliedbio.cfg/php/enduser/ask.php
Web link
http://www.appliedbiosystems.com Submission date
Aug 31, 2004
Last update date
Jan 18, 2013
Contact name
chunlin xiao
E-mail(s)
chunlin.xiao@celera.com Phone
1-800-762-4001
URL
http://www.appliedbiosystems.com Organization name
Applied Biosystem
Street address
45 West Gude Drive
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Samples (146)
GSM67670 , GSM67671 , GSM67672 , GSM67673 , GSM67674 , GSM67675
GSM67676 ,
GSM67677 ,
GSM67678 ,
GSM67679 ,
GSM67680 ,
GSM67681 ,
GSM67682 ,
GSM67683 ,
GSM67684 ,
GSM67685 ,
GSM67686 ,
GSM67687 ,
GSM67688 ,
GSM67689 ,
GSM67691 ,
GSM67692 ,
GSM67693 ,
GSM67694 ,
GSM67695 ,
GSM67696 ,
GSM67697 ,
GSM67698 ,
GSM67699 ,
GSM67700 ,
GSM67701 ,
GSM67702 ,
GSM67703 ,
GSM67704 ,
GSM67705 ,
GSM67706 ,
GSM67707 ,
GSM67708 ,
GSM67709 ,
GSM67710 ,
GSM88577 ,
GSM88578 ,
GSM88579 ,
GSM88580 ,
GSM88581 ,
GSM88582 ,
GSM88583 ,
GSM88584 ,
GSM88585 ,
GSM88586 ,
GSM88587 ,
GSM88588 ,
GSM88589 ,
GSM88590 ,
GSM88591 ,
GSM88592 ,
GSM142466 ,
GSM142467 ,
GSM142468 ,
GSM142469 ,
GSM142470 ,
GSM142471 ,
GSM144122 ,
GSM144123 ,
GSM144124 ,
GSM144125 ,
GSM144126 ,
GSM144127 ,
GSM144128 ,
GSM144129 ,
GSM144130 ,
GSM144131 ,
GSM144132 ,
GSM144133 ,
GSM144134 ,
GSM144135 ,
GSM144136 ,
GSM160607 ,
GSM160609 ,
GSM160613 ,
GSM160615 ,
GSM217333 ,
GSM217334 ,
GSM217335 ,
GSM217336 ,
GSM217337 ,
GSM217338 ,
GSM217339 ,
GSM217340 ,
GSM217341 ,
GSM272655 ,
GSM272656 ,
GSM272657 ,
GSM272658 ,
GSM272659 ,
GSM272660 ,
GSM272661 ,
GSM272662 ,
GSM272663 ,
GSM272664 ,
GSM272665 ,
GSM272666 ,
GSM281086 ,
GSM281087 ,
GSM281088 ,
GSM281089 ,
GSM281090 ,
GSM281091 ,
GSM281092 ,
GSM281093 ,
GSM281094 ,
GSM281095 ,
GSM281099 ,
GSM281100 ,
GSM281101 ,
GSM281102 ,
GSM281103 ,
GSM281104 ,
GSM281105 ,
GSM281109 ,
GSM281113 ,
GSM281114 ,
GSM281115 ,
GSM281116 ,
GSM281120 ,
GSM281121 ,
GSM281124 ,
GSM281125 ,
GSM281126 ,
GSM281127 ,
GSM351481 ,
GSM351486 ,
GSM351488 ,
GSM351490 ,
GSM587717 ,
GSM587718 ,
GSM587719 ,
GSM587720 ,
GSM880945 ,
GSM880946 ,
GSM880947 ,
GSM880948 ,
GSM880949 ,
GSM880950 ,
GSM880951 ,
GSM880952 Series (13)
GSE3155 Gene expression profiling of the 20 human early breast carcinomas by three miaroarray platforms
GSE4214 Gene expression profiling of the four human tissues by two microarray platforms and TaqMan real-time PCR
GSE6140 Cross platform microarray analysis for robust identification of differentially expressed genes
GSE6264 Transcriptional Profiling of Subjects from the Iowa Adoption Studies
GSE6982 Long Oligonucleotide Microarrays for African Green Monkey Gene Expression Profile Analysis
GSE8752 TAF6 orchestrates transcription programs and apoptosis in the absence of p53
GSE9851 Determining the impact of alternative splicing events on transcriptome dynamics
GSE10795 p53 independent TAF6delta target genes.
GSE11372 Hydroxyurea stimulates production of pro-inflammatory cytokines in endothelial cells: Relevance to sickle cell disease.
GSE13991 Modulation of gene expression in U251 glioblastoma cells by binding of mutant p53 to intronic and intergenic sequences
GSE23838 Genes regulated by Sox2 in glioma cancer cell line
GSE23839 An integrative analysis of the SOX2 response program in glioblastoma
GSE36090 Gene expression profiles in human oral squamous cell carcinoma tissues and cell lines
Data table header descriptions ID Gene ID Primary id for the probe
hCT List of transcripts associated with the primary gene id
hCP hCG RefSeq_NM RefSeq_NP GENE Entrez GENE ID
GB_LIST GenBank or RefSeq Accession Number
SPOT_ID GB_Accession Gene_Symbol gene symbol
Gene_Name gene name
Gene_Product MedLine PubMed OMIM SwissProt SwissProt accession
UniGene UniGene ID
Panther_Family_Name Panther_Subfamily_Name Panther_Function Panther_Process GO_Molecular_Function GO_Biological_Process GO_Cellular_Component EC Cytoband Chromosome_Number
Data table ID Gene ID hCT hCP hCG RefSeq_NM RefSeq_NP GENE GB_LIST SPOT_ID GB_Accession Gene_Symbol Gene_Name Gene_Product MedLine PubMed OMIM SwissProt UniGene Panther_Family_Name Panther_Subfamily_Name Panther_Function Panther_Process GO_Molecular_Function GO_Biological_Process GO_Cellular_Component EC Cytoband Chromosome_Number 100002
R26_hCT1643326.2
R26_hCT1643326.2
R26_hCT1643326.2
100003
hCG2041918
hCT2347149
hCP1913012
hCG2041918
hCG2041918
10
100027
hCG31426.2
hCT2281900|hCT2281901|hCT22606
hCP1853155|hCP1853147|hCP45180
hCG31426.2
NM_006298
NP_006289
7745 NM_006298 U88080|U57796|AL358933
ZNF192
zinc finger protein 192
zinc finger protein 192
97386587|20036809
10567577|9244436
602240
Q15776
Hs.57679
KRAB-RELATED C2H2-TYPE ZINC-FINGERS
ZINC FINGER PROTEIN 192
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor
Cell proliferation and differentiation|Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation
GO:0005515:protein binding|GO:0003700:transcription factor activity
GO:0006355:regulation of transcription, DNA-dependent
GO:0005634:nucleus
6p21.3
6
100036
hCG1820823.1
hCT1971269
hCP1783580
hCG1994281|hCG1818648.1|hCG2009028|hCG1989348|hCG1820837.1|hCG1979099.1|hCG1820823.1|hCG1820838.1
hCG1820823.1
10
100037
hCG42687.4
hCT33970|hCT1955289|hCT1955290|hCT1967629|hCT1967628|hCT2265057
hCP52016|hCP1893163|hCP1762098|hCP1780863|hCP1762093|hCP1780869
hCG42687.4
NM_003345
NP_003336
7329 NM_003345 AK024172|BT007010|BC051289|D45050|AL833737|X96427|BC000744|U66867|U29092|BT006932|U31882|U31933|BC000427|AK093616|BC004429|BC004437|U66818|AJ002385|U38785|U45328
UBE2I
ubiquitin-conjugating enzyme E2I (UBC9 homolog, yeast)
ubiquitin-conjugating enzyme E2I
96160471|97341072|22188352|96181515|96251079|97220053|97472155|22050547|22388257|20347199|96394648|96242147
12477932|10806190|9333025|8668125|11877416|8565643|8668529|9067428|8798754|8610150|12200128|9197546
601661
P50550
Hs.84285
UBIQUITIN-CONJUGATING ENZYME E2
UBIQUITIN-CONJUGATING ENZYME E2-18 KD UBCH9
Ligase -> Other ligase
Protein metabolism and modification
GO:0004840:ubiquitin conjugating enzyme activity
GO:0006511:ubiquitin-dependent protein catabolism|GO:0006464:protein modification
GO:0005716:synaptonemal complex
6.3.2.19
16p13.3
16
100039
hCG2015782
hCT2308302|hCT2308303
hCP1881089|hCP1881087
hCG2015782
NM_016238
NP_057322
51434 NM_016238 BC017316|BC002941|AY007104|BC009498|BC040130|AK021809|AL157481|AL137586|AF191340
ANAPC7
anaphase-promoting complex subunit 7
anaphase-promoting complex subunit 7
96207227|98136241|97264341
8619474|9469815|9110174
606949
Hs.52763
TPR-DOMAIN CONTAINING PROTEIN
ANAPHASE-PROMOTING COMPLEX SUBUNIT 7
Ligase -> Other ligase
Cell cycle -> Cell cycle control|Cell cycle -> Mitosis
GO:0000074:regulation of cell cycle
GO:0005680:anaphase-promoting complex
12q13.12
12
100043
R26_hCT1645588.2
R26_hCT1645588.2
R26_hCT1645588.2
100044
NM_013394.1
NM_013394.1
NP_037526.1
NM_013394.1 100045
R26_hCT1815543.1
R26_hCT1815543.1
R26_hCT1815543.1
100051
hCG1642464.3
hCT1642591
hCP1617625
hCG1642464.3
hCG1642464.3
SMALL GTPASE
RAP
Select regulatory molecule -> G-protein -> Small GTPase
Intracellular protein traffic -> Endocytosis -> Receptor mediated endocytosis|Signal transduction|Intracellular protein traffic -> Exocytosis -> Regulated exocytosis
3
100052
hCG22993.3
hCT1951828|hCT14094|hCT2261683|hCT2261680
hCP1766010|hCP1799420|hCP40412|hCP1799419
hCG22993.3
NM_020439
NP_065172
57172 NM_020439 AF428261|AX399682|AY212935|AL049688|AL023754|BC032787|AK095713
CAMK1G
calcium/calmodulin-dependent protein kinase IG
calcium/calmodulin-dependent protein kinase IG
20113118|22625683
12637513|10645953
Hs.199068
SERINE/THREONINE PROTEIN KINASE
CALMODULIN-DEPENDENT PROTEIN KINASE
Kinase -> Protein kinase -> Non-receptor serine/threonine protein kinase
Protein metabolism and modification -> Protein modification -> Protein phosphorylation|Signal transduction
GO:0016740:transferase activity|GO:0004674:protein serine/threonine kinase activity|GO:0005524:ATP binding
GO:0006468:protein amino acid phosphorylation
1q32-q41
1
100057
hCG1793655.1
hCT1832915
hCP1734768
hCG1793655.1
AK098698 BC027612 AK098698|BC027612
FAMILY NOT NAMED
SUBFAMILY NOT NAMED
Molecular function unclassified
Biological process unclassified
12
100058
hCG33215.3
hCT24408
hCP46567
hCG33215.3
NM_031298
NP_112588
83460 NM_031298 BC001409|AX399962
MGC2963
hypothetical protein MGC2963
hypothetical protein MGC2963
Hs.30011
17p13.3
17
100060
hCG22998.3
hCT1968148|hCT14099
hCP1782608|hCP40414
hCG22998.3
NM_032257
NP_115633
84217 NM_032257 BC024186|AL136858|AK057384
ZMYND12
zinc finger, MYND domain containing 12
zinc finger, MYND domain containing 12
21154917|22388257
11230166|12477932
Hs.294009
1p34.1
1
100062
hCG2039675
hCT2300582|hCT1951615
hCP1797942|hCP1765900
hCG2039675|hCG2039987
NM_145298
NP_660341
200316 NM_145298 U38435|BC038808
APOBEC3F
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3F
21853299|22571444
12683974|11863358
Hs.423687
CYTIDINE DEAMINASE RELATED
PHORBOLIN-RELATED
Hydrolase -> Other hydrolase
Biological process unclassified
22q13.1-q13.2
22
100064
hCG14966.2
hCT5987
hCP34956
hCG14966.2
NM_001432
NP_001423
2069 NM_001432 BC035806|D30783
EREG
epiregulin
epiregulin precursor
97479200|98221186|98080142|22588149
12702554|9553109|9337852|9419975
602061
O14944
Hs.115263
TOMOREGULIN - RELATED
Miscellaneous function -> Surfactant
Biological process unclassified
GO:0005154:epidermal growth factor receptor binding|GO:0008083:growth factor activity
GO:0000074:regulation of cell cycle|GO:0008283:cell proliferation|GO:0007173:EGF receptor signaling pathway|GO:0007267:cell-cell signaling|GO:0001525:angiogenesis
GO:0005887:integral to plasma membrane|GO:0005615:extracellular space
4q21.21
4
100079
hCG2012240
hCT2302720|hCT2302722|hCT2302721
hCP1807913|hCP1807916|hCP1807915
hCG2012240|hCG1731120.2
NM_002156
NP_002147
3329 NM_002156 AJ250915|BC002676|BC010112|BC003030|BC047350|M22382|M34664
HSPD1
heat shock 60kDa protein 1 (chaperonin)
heat shock 60kDa protein 1 (chaperonin)
91103874|89313783|22204334|22482612|22388257|22294580|21848948|22538379|21661873|21850502|22206887|22349878|22370902
11862386|12594256|11803047|12515899|12218165|1980192|2568584|12215374|12483302|11860186|12406306|12461076|12477932
118190
P10809
Hs.79037
HSP60 AND TCP-1 CHAPERONIN FAMILY MEMBER
60 KDA CHAPERONIN
Chaperone -> Chaperonin
Protein metabolism and modification -> Protein folding
GO:0003773:heat shock protein activity|GO:0005524:ATP binding
GO:0030150:mitochondrial matrix protein import|GO:0006457:protein folding
GO:0005759:mitochondrial matrix
2q33.1
2
100089
hCG22245.3
hCT1955812|hCT2329384|hCT13338
hCP1765342|hCP1867009|hCP39735
hCG22245.3
NM_018199
NP_060669
55218 NM_018199 AL834434|BC001962|AK001600|BX161412|AK056025
C14orf114
chromosome 14 open reading frame 114
chromosome 14 open reading frame 114
22388257
12477932
Hs.5457
FAMILY NOT NAMED
SUBFAMILY NOT NAMED
Molecular function unclassified
Biological process unclassified
14q24.1
14
100093
hCG17268.3
hCT8318|hCT2299658|hCT2299656
hCP37583|hCP1856568|hCP1856567
hCG17268.3
NM_000168
NP_000159
2737 NM_000168 AJ250408|M20674|M57609|BC032660
GLI3
GLI-Kruppel family member GLI3 (Greig cephalopolysyndactyly syndrome)
GLI-Kruppel family member GLI3
90377231|99178983|97207645|89096896|93391968|22483626|98066664|99371786|22436536|22436543
8378770|9402960|2118997|10077605|12575661|10441342|12545275|12575660|2850480|9054938
165240
P10071
Hs.72916
KRAB BOX ZINC FINGER TRANSCRIPTION FACTORS
ZINC FINGER PROTEIN
Transcription factor -> Zinc finger transcription factor -> KRAB box transcription factor
Nucleoside, nucleotide and nucleic acid metabolism -> mRNA transcription -> mRNA transcription regulation
GO:0003700:transcription factor activity
GO:0006366:transcription from Pol II promoter|GO:0007275:development|GO:0000060:protein-nucleus import, translocation|GO:0006355:regulation of transcription, DNA-dependent|GO:0007345:embryogenesis and morphogenesis|GO:0007165:signal transduction
GO:0005737:cytoplasm|GO:0005634:nucleus
7p13
7
100095
hCG1817887.1
hCT1960466
hCP1771884
hCG1817887.1
hCG1817887.1
10
33202 15067 Kbytes .Supplementary data files not provided
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