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Platform GPL10572 Query DataSets for GPL10572
Status Public on Jun 30, 2010
Title NimbleGen Mus musculus MM8 25.6K 60mer
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen
Manufacture protocol Nimblegen
 
Description Expression design for Mouse from mm8.
 
Contributor(s) Sarver AL
Submission date Jun 21, 2010
Last update date Jun 30, 2010
Contact name Aaron Sarver
Organization name University of Minnesota
Department Masonic Cancer Center
Lab Biostatistics and Informatics
Street address 425 East River Road
City Minneapolis
State/province MN
ZIP/Postal code 55455
Country USA
 
Samples (27) GSM558969, GSM558970, GSM558971, GSM558972, GSM558973, GSM558974 
Series (5)
GSE22500 Conditional Dmrt1 knockout gene expression (phase 6)
GSE22507 Conditional Dmrt1 knockout gene expression (phase 7)
GSE22508 Conditional Dmrt1 knockout gene expression (phase 8)

Data table header descriptions
ID
ACCESSION
BUILD
FEAT_TYPE
CHROMOSOME
START
STOP
DESCRIPTION
GB_ACC GenBank accession

Data table
ID ACCESSION BUILD FEAT_TYPE CHROMOSOME START STOP DESCRIPTION GB_ACC
NM_001001130 NM_001001130 MM8 transcript chr13 68246902 68254237 ExemplarFor 'NM_001001130'; gene_id '22746'; transcript_id 'NM_001001130'; gene_name 'Zfp85-rs1'; alt 'KRAB19 NM_001001130
NM_001001144 NM_001001144 MM8 transcript chr9 110178522 110230113 ExemplarFor 'NM_001001144'; gene_id '235623'; transcript_id 'NM_001001144'; gene_name 'Scap'; alt '9530044G19 NM_001001144
NM_001001152 NM_001001152 MM8 transcript chr13 67754014 67768165 ExemplarFor 'NM_001001152'; gene_id '238690'; transcript_id 'NM_001001152'; gene_name 'Zfp458'; alt 'BC062958 NM_001001152
NM_001001160 NM_001001160 MM8 transcript chr6 85436184 85468652 ExemplarFor 'NM_001001160'; gene_id '330369'; transcript_id 'NM_001001160'; gene_name 'Fbxo41'; alt '9630017H13 NM_001001160
NM_001001176 NM_001001176 MM8 transcript chrX 102409592 102422352 ExemplarFor 'NM_001001176'; gene_id '407786'; transcript_id 'NM_001001176'; gene_name 'Taf9b'; alt 'BC066223 NM_001001176
NM_001001177 NM_001001177 MM8 transcript chr17 34024334 34068780 ExemplarFor 'NM_001001177'; gene_id '407788'; transcript_id 'NM_001001177'; gene_name 'BC051142'; alt '-'; cDNA sequence BC051142 NM_001001177
NM_001001179 NM_001001179 MM8 transcript chr6 128505900 128547225 ExemplarFor 'NM_001001179'; gene_id '232400'; transcript_id 'NM_001001179'; gene_name 'BC048546'; alt 'MGC58520'; cDNA sequence BC048546 NM_001001179
NM_001001180 NM_001001180 MM8 transcript chr7 140661008 140673452 ExemplarFor 'NM_001001180'; gene_id '407812'; transcript_id 'NM_001001180'; gene_name 'BC066028'; alt '-'; cDNA sequence BC066028 NM_001001180
NM_001001181 NM_001001181 MM8 transcript chr18 75131269 75135299 ExemplarFor 'NM_001001181'; gene_id '407819'; transcript_id 'NM_001001181'; gene_name 'BC031181'; alt '-'; cDNA sequence BC031181 NM_001001181
NM_001001182 NM_001001182 MM8 transcript chr2 59700201 59926579 ExemplarFor 'NM_001001182'; gene_id '407823'; transcript_id 'NM_001001182'; gene_name 'Baz2b'; alt '5830435C13Rik NM_001001182
NM_001001183 NM_001001183 MM8 transcript chr17 24785301 24808714 ExemplarFor 'NM_001001183'; gene_id '407831'; transcript_id 'NM_001001183'; gene_name 'BC054438'; alt '-'; cDNA sequence BC054438 NM_001001183
NM_001001184 NM_001001184 MM8 transcript chr8 48074410 48116017 ExemplarFor 'NM_001001184'; gene_id '408022'; transcript_id 'NM_001001184'; gene_name 'BC065112'; alt 'MGC86034'; cDNA sequence BC065112 NM_001001184
NM_001001186 NM_001001186 MM8 transcript chr13 67862680 67874863 ExemplarFor 'NM_001001186'; gene_id '408065'; transcript_id 'NM_001001186'; gene_name 'Zfp456'; alt 'BC065418 NM_001001186
NM_001001187 NM_001001187 MM8 transcript chr13 68171999 68182647 ExemplarFor 'NM_001001187'; gene_id '408068'; transcript_id 'NM_001001187'; gene_name '3830402I07Rik'; alt '-'; RIKEN cDNA 3830402I07 gene NM_001001187
NM_001001295 NM_001001295 MM8 transcript chr9 64105014 64139196 ExemplarFor 'NM_001001295,NM_172519'; gene_id '213550'; transcript_id 'NM_001001295'; gene_name 'AV340375'; alt '-'; expressed sequence AV340375 NM_001001295
NM_001001297 NM_001001297 MM8 transcript chr2 21123477 21132763 ExemplarFor 'NM_001001297,NM_177588'; gene_id '208967'; transcript_id 'NM_001001297'; gene_name 'Thnsl1'; alt 'AW413632'; threonine synthase-like 1 (bacterial) NM_001001297
NM_001001303 NM_001001303 MM8 transcript chr6 125127472 125131210 ExemplarFor 'NM_001001303,NM_001001978'; gene_id '407972'; transcript_id 'NM_001001303'; gene_name 'Gapdh'; alt 'Gapd NM_001001303
NM_001001309 NM_001001309 MM8 transcript chr2 12024512 12219773 ExemplarFor 'NM_001001309'; gene_id '241226'; transcript_id 'NM_001001309'; gene_name 'Itga8'; alt 'AI447669'; integrin alpha 8 NM_001001309
NM_001001318 NM_001001318 MM8 transcript chr7 106215198 106234722 ExemplarFor 'NM_001001318'; gene_id '209380'; transcript_id 'NM_001001318'; gene_name 'LOC209380'; alt '-'; similar to very large inducible GTPase 1 NM_001001318
NM_001001319 NM_001001319 MM8 transcript chr4 143325812 143336005 ExemplarFor 'NM_001001319'; gene_id '347710'; transcript_id 'NM_001001319'; gene_name 'Pramel5'; alt '-'; preferentially expressed antigen in melanoma like 5 NM_001001319

Total number of rows: 25631

Table truncated, full table size 4814 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL10572_MM8_60mer.ngd.gz 1.5 Mb (ftp)(http) NGD
GPL10572_MM8_60mer_expr.ndf.gz 4.4 Mb (ftp)(http) NDF

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