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    hip1 huntingtin interacting protein 1 [ Lepisosteus oculatus (spotted gar) ]

    Gene ID: 102695425, updated on 10-Mar-2024

    Summary

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    Gene symbol
    hip1
    Gene description
    huntingtin interacting protein 1
    See related
    Ensembl:ENSLOCG00000001155
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lepisosteus oculatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus
    Orthologs
    human zebrafish all
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    Genomic context

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    See hip1 in Genome Data Viewer
    Location:
    chromosome: LG22
    Exon count:
    32
    Annotation release Status Assembly LG Location
    101 current LepOcu1 (GCF_000242695.1) LG22 NC_023200.1 (306251..353692)

    Linkage Group LG22 - NC_023200.1Genomic Context describing neighboring genes Neighboring gene NOP2/Sun RNA methyltransferase 5 Neighboring gene POM121 transmembrane nucleoporin Neighboring gene yippee-like 2a Neighboring gene glycerophosphodiester phosphodiesterase domain containing 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_023200.1 Chromosome LG22 Reference LepOcu1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables clathrin adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables clathrin light chain binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3,4-bisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphatidylinositol-3,5-bisphosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in activation of cysteine-type endopeptidase activity involved in apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in clathrin coat assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cortical patch IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in clathrin-coated vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extrinsic component of postsynaptic membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in presynapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    huntingtin-interacting protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lepisosteus oculatus Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LepOcu1 Primary Assembly

    Genomic

    1. NC_023200.1 Reference LepOcu1 Primary Assembly

      Range
      306251..353692
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015367688.1 → XP_015223174.1  huntingtin-interacting protein 1 isoform X1

      UniProtKB/TrEMBL
      W5LYY1
      Related
      ENSLOCP00000001338.1, ENSLOCT00000001343.1
      Conserved Domains (5) summary
      smart00307
      Location:834 → 1032
      ILWEQ; I/LWEQ domain
      COG4372
      Location:511 → 789
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
      pfam07651
      Location:36 → 307
      ANTH; ANTH domain
      pfam16515
      Location:481 → 568
      HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1
      cl23720
      Location:383 → 487
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)

    2. XM_015367689.1 → XP_015223175.1  huntingtin-interacting protein 1 isoform X2

      UniProtKB/TrEMBL
      W5LYY1
      Conserved Domains (5) summary
      smart00307
      Location:801 → 999
      ILWEQ; I/LWEQ domain
      COG4372
      Location:478 → 756
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
      pfam07651
      Location:7 → 274
      ANTH; ANTH domain
      pfam16515
      Location:448 → 535
      HIP1_clath_bdg; Clathrin-binding domain of Huntingtin-interacting protein 1
      cl23720
      Location:350 → 454
      RILP-like; Rab interacting lysosomal protein-like 1 and 2 (Rilpl1 and Rilpl2)
    Nucleotide Protein
    Heading Accession and Version

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