U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    samd11 sterile alpha motif domain containing 11 [ Danio rerio (zebrafish) ]

    Gene ID: 569122, updated on 11-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    samd11provided by ZNC
    Official Full Name
    sterile alpha motif domain containing 11provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060428-2
    See related
    Ensembl:ENSDARG00000077852 AllianceGenome:ZFIN:ZDB-GENE-060428-2
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    samd11l
    Summary
    Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SAMD11 (sterile alpha motif domain containing 11). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See samd11 in Genome Data Viewer
    Location:
    chromosome: 23
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 23 NC_007134.7 (23020114..23123901)
    105 previous assembly GRCz10 (GCF_000002035.5) 23 NC_007134.6 (23093470..23197350)

    Chromosome 23 - NC_007134.7Genomic Context describing neighboring genes Neighboring gene arginine-glutamic acid dipeptide (RE) repeats a Neighboring gene uncharacterized LOC101883493 Neighboring gene NOC2-like nucleolar associated transcriptional repressor Neighboring gene kelch-like family member 17

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Cloning and characterization of mr-s, a novel SAM domain protein, predominantly expressed in retinal photoreceptor cells. Inoue T, et al. BMC Dev Biol, 2006 Mar 16. PMID 16539743, Free PMC Article
    2. foxl2 and foxl3 are two ancient paralogs that remain fully functional in teleosts. Crespo B, et al. Gen Comp Endocrinol, 2013 Dec 1. PMID 24045113
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    sterile alpha motif domain-containing protein 11
    Names
    sterile alpha motif domain containing 11, like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007134.7 Reference GRCz11 Primary Assembly

      Range
      23020114..23123901
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009296908.3 → XP_009295183.1  sterile alpha motif domain-containing protein 11 isoform X3

      UniProtKB/TrEMBL
      A0A8M3AMZ4
      Conserved Domains (3) summary
      smart00454
      Location:735 → 775
      SAM; Sterile alpha motif
      pfam01342
      Location:93 → 165
      SAND; SAND domain
      cl15755
      Location:734 → 785
      SAM_superfamily; SAM (Sterile alpha motif )

    2. XM_009296907.3 → XP_009295182.1  sterile alpha motif domain-containing protein 11 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AVF8, E7F6B2
      Related
      ENSDARP00000112558.1, ENSDART00000146463.3
      Conserved Domains (3) summary
      cd09579
      Location:734 → 801
      SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group
      smart00454
      Location:735 → 791
      SAM; Sterile alpha motif
      pfam01342
      Location:93 → 165
      SAND; SAND domain

    3. XM_021469959.1 → XP_021325634.1  sterile alpha motif domain-containing protein 11 isoform X4

      UniProtKB/TrEMBL
      A0A8M9PL54
      Related
      ENSDARP00000152637.1, ENSDART00000189843.1
      Conserved Domains (1) summary
      cd09579
      Location:575 → 642
      SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group

    4. XM_021469960.1 → XP_021325635.1  sterile alpha motif domain-containing protein 11 isoform X5

      UniProtKB/TrEMBL
      A0A8M9PWU9
      Conserved Domains (1) summary
      cd09579
      Location:474 → 541
      SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group

    5. XM_009296913.3 → XP_009295188.1  sterile alpha motif domain-containing protein 11 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PWY4
      Conserved Domains (1) summary
      cd09579
      Location:460 → 527
      SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395148.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      10927..46325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021473684.1 → XP_021329359.1  sterile alpha motif domain-containing protein 11 isoform X1

      UniProtKB/TrEMBL
      A0A8M9PWY4
      Conserved Domains (1) summary
      cd09579
      Location:460 → 527
      SAM_Samd7,11; SAM domain of Samd7,11 subfamily of Polycomb group

    2. XM_021473685.1 → XP_021329360.1  sterile alpha motif domain-containing protein 11 isoform X6

      UniProtKB/TrEMBL
      A0A8M9Q7Z7
      Conserved Domains (1) summary
      cl15755
      Location:460 → 511
      SAM_superfamily; SAM (Sterile alpha motif )
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.