1UFN


Conserved Protein Domain Family
SAND
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pfam01342: SAND (this model, PSSM-Id:279658 is obsolete and has been replaced by 460167)
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SAND domain
The DNA binding activity of two proteins has been mapped to the SAND domain. The conserved KDWK motif is necessary for DNA binding, and it appears to be important for dimerization. This region is also found in the putative transcription factor RegA from the multicellular green alga Volvox cateri. This region of RegA is known as the VARL domain.
Links
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Statistics
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PSSM-Id: 279658
Aligned: 68 rows
Threshold Bit Score: 69.1403
Created: 22-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1UFN_A        14 SPTLPVTCGKAKGTLFQEKLKQ-GASKKCIQNEAg-DWLTVKEFLNEGGRATSKDWKGVIRCNGETLRHLEQKGLL 87  house mouse
EGW01155      82 EIAYPITCGESKAILLWKKFVCpGINVKCVKFND--QLISPKHFVHLAGKSTLKDWKRAIRLGGIMLRKMMDSGQI 155 Chinese hamster
EFO27974      19 APILEVRCGHLVARLHTEKFVCpGIHQPCIEL-Dg-ELISPKEFTIRANKDKQKDWKGSIRIGKSNMRALMEMKSL 92  eye worm
XP_002643385  75 PPIITVKCGTLTAKMVTKLFTCpGIHQNCILIDGenEYISPKEFTVRANKDKQKDWKGSIRIGKSNLRTLMEMRSL 150 Caenorhabditis brig...
XP_002603143   1 eVAYPVMCGDNQGLLIWKKFICpGIHSRCIKYNG--MMRTPKEFVVEAGKAGLKDWKRAIRINGTMIRRMMETGEL 74  Florida lancelet
CAG00054       4 EYGYPITCGDSRAVLLFKKFVCpGINVRCVKFND--QLISPKQFVHLAGKATLKDWKRAIRLGGVMLRKMMDSGQI 77  spotted green puffe...
XP_005744750  16 eIGCPITCGDCKAVLLVKKFVCpGINVKCVKYED--QLISPKQFVHISGKATLKDWKRAIRMGGVMLRKMMDSGQL 89  Pundamilia nyererei
XP_006175666  89 EIVYPITCGDSRANLIWRKFVCpGINVKCVQYDE--HVISPKEFVHLAGKSTLKDWKRAIRMNGIMLRKIMDSGEL 162 Wild Bactrian camel
XP_011620125 104 DVFYPITCGDAKATLIWKKFVCpGINVKCVQFNE--QLISPKEFVCLAGKSTLKDWKRAIRLNSTMLRKIMDSGEL 177 torafugu
XP_009860827 184 DSTYPITCGNNKGDLVWKKFVCpGINAKCVKCGD--NWFTPKEFVNYAGKSTLKDWKRAIRINGIMLRKMIENGEL 257 vase tunicate
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