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    RIGI RNA sensor RIG-I [ Chelonia mydas (Green sea turtle) ]

    Gene ID: 102936061, updated on 10-Mar-2024

    Summary

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    Gene symbol
    RIGI
    Gene description
    RNA sensor RIG-I
    Locus tag
    UY3_12101
    See related
    EnsemblRapid:ENSCMYG00015010732
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Chelonia mydas
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Testudinata; Testudines; Cryptodira; Durocryptodira; Americhelydia; Chelonioidea; Cheloniidae; Chelonia
    Also known as
    DDX58
    Orthologs
    human mouse all
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    Genomic context

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    See RIGI in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    103 current rCheMyd1.pri.v2 (GCF_015237465.2) 5 NC_051245.2 (116445523..116480778, complement)
    102 previous assembly rCheMyd1.pri (GCF_015237465.1) 6 NC_051246.1 (116445519..116480316, complement)

    Chromosome 5 - NC_051245.2Genomic Context describing neighboring genes Neighboring gene signal peptide peptidase-like 2B Neighboring gene aconitase 1 Neighboring gene TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase Neighboring gene small integral membrane protein 27

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    antiviral innate immune response receptor RIG-I
    Names
    DExD/H-box helicase 58
    Putative ATP-dependent RNA helicase DDX58

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Chelonia mydas Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference rCheMyd1.pri.v2 Primary Assembly

    Genomic

    1. NC_051245.2 Reference rCheMyd1.pri.v2 Primary Assembly

      Range
      116445523..116480778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_043547765.1 → XP_043403700.1  antiviral innate immune response receptor RIG-I isoform X4

      UniProtKB/TrEMBL
      M7BFB9
      Conserved Domains (5) summary
      COG1111
      Location:220 → 772
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08817
      Location:74 → 163
      CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
      cd15805
      Location:784 → 898
      RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
      cl14633
      Location:10 → 66
      DD; Death Domain Superfamily of protein-protein interaction domains
      cl28899
      Location:218 → 419
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    2. XM_043547766.1 → XP_043403701.1  antiviral innate immune response receptor RIG-I isoform X5

      UniProtKB/TrEMBL
      M7BFB9
      Related
      ENSCMYP00015016666.1, ENSCMYT00015020198.1
      Conserved Domains (5) summary
      COG1111
      Location:220 → 770
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08817
      Location:74 → 163
      CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
      cd15805
      Location:782 → 896
      RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
      cl14633
      Location:10 → 66
      DD; Death Domain Superfamily of protein-protein interaction domains
      cl28899
      Location:218 → 419
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    3. XM_043547764.1 → XP_043403699.1  antiviral innate immune response receptor RIG-I isoform X2

      UniProtKB/TrEMBL
      M7BFB9
      Related
      ENSCMYP00015016659.1, ENSCMYT00015020191.1
      Conserved Domains (5) summary
      COG1111
      Location:246 → 798
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08817
      Location:100 → 189
      CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
      cd15805
      Location:810 → 924
      RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
      cl14633
      Location:36 → 92
      DD; Death Domain Superfamily of protein-protein interaction domains
      cl28899
      Location:244 → 445
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    4. XM_037902103.2 → XP_037758031.1  antiviral innate immune response receptor RIG-I isoform X3

      UniProtKB/TrEMBL
      M7BFB9
      Related
      ENSCMYP00015016650.1, ENSCMYT00015020181.1
      Conserved Domains (5) summary
      COG1111
      Location:246 → 796
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08816
      Location:2 → 92
      CARD_RIG-I_r1; Caspase activation and recruitment domain found in RIG-I, first repeat
      cd08817
      Location:100 → 189
      CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
      cd15805
      Location:808 → 922
      RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
      cl28899
      Location:244 → 445
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily

    5. XM_043547762.1 → XP_043403697.1  antiviral innate immune response receptor RIG-I isoform X1

      UniProtKB/TrEMBL
      M7BFB9
      Related
      ENSCMYP00015016645.1, ENSCMYT00015020177.1
      Conserved Domains (5) summary
      COG1111
      Location:246 → 798
      MPH1; ERCC4-related helicase [Replication, recombination and repair]
      cd08816
      Location:2 → 92
      CARD_RIG-I_r1; Caspase activation and recruitment domain found in RIG-I, first repeat
      cd08817
      Location:100 → 189
      CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
      cd15805
      Location:810 → 924
      RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
      cl28899
      Location:244 → 445
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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